Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq33 217 5e-53 seq132 145 3e-31 >seq33 Length=23381312 Score = 217 bits (240), Expect = 5e-53 Identities = 273/372 (73%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 1445 AAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAA 1504 || ||||| ||| | || || || ||||||||||| ||||||||| | | || || ||| Sbjct 14639962 AAGAGAAACACAATACTCTTACAAGGACCAGCAAGCACAGGAAAAAGTCTAATAGCACAA 14639903 Query 1505 GCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCA 1564 ||| || || |||||| |||| || ||||| ||||| | |||| |||||| Sbjct 14639902 AAAATAAGTGAATTGGTTGGTAATATTGGATGCTATAACCCAGCAGACATAAACTTTCCA 14639843 Query 1565 TTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAA 1624 ||||| | || || |||||| | |||||||| ||||| || || | | | || || Sbjct 14639842 TTTAACCATTGCTGTAACAAAAATATCATTTGGATAGAAGAGGCAGGAATCCTAGGACAG 14639783 Query 1625 CAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGT 1684 ||||| || ||||| ||||| || ||||||||| || ||| | || |||||||| Sbjct 14639782 CAAGTCAACCAATTCAAAGCCATAATGCCTGGACAAAGCATAAGACTAGACCAAAAAGGA 14639723 Query 1685 AAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACA 1744 ||||| || ||| ||||||||||| ||||||||||||| |||||| | || ||| Sbjct 14639722 AAAGGCTCCAAATCAATAGAACCAACTCCGGTAATTATGACAAGTAATGAGGACATCACA 14639663 Query 1745 ATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAAGAGACAGAATG 1804 ||||| ||||| ||||||||| |||||| |||| | ||||||| | | |||| ||| Sbjct 14639662 ATTGTCAGAATAGGATGTGAAATTAGACCTAAACACTCTGAACCAATTAAACACAG-ATG 14639604 Query 1805 T-TGAACATTAA 1815 | | |||||||| Sbjct 14639603 TGTTAACATTAA 14639592 >seq132 Length=3867412 Score = 145 bits (160), Expect = 3e-31 Identities = 297/437 (68%), Gaps = 6/437 (1%) Strand=Plus/Minus Query 1368 AAATTTTTAGAATGCACGGATGGAATTGGATTAAAGTTTGTCACGCTATAGCATGTGT-- 1425 |||| |||||| | | |||| ||| |||||||| || || || || |||||| Sbjct 462508 AAATATTTAGACTAAATGGATATAATCCTATTAAAGTCTGCCATGCCAT--CATGTGCAG 462451 Query 1426 TTTAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGG 1485 | | || | |||| || || |||| || || | || ||||||||| ||||| Sbjct 462450 TCTCAACAAACAACTAGGAAAGAGAAGCACTACCCTACTACAGGGACCAGCAGACACAGG 462391 Query 1486 AAAATCTATCATTGCTCAAGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGC 1545 |||| | || | |||||| || || ||| ||||| |||| || || || | Sbjct 462390 AAAAAGTCTCTTAGCTCAAAAAATCTGTGAATTTGTTGGTAACATTGGCTGCTACAACCC 462331 Query 1546 AGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGA 1605 ||| || |||| ||||| || ||||||| ||| ||| | |||| ||| |||| || Sbjct 462330 AGCTAACTTAAACTTTCCTTTCAATGACTCCTGCAACAAATACATAATATGGGTTGAGGA 462271 Query 1606 AGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAAT 1665 ||| || ||| | ||||| || || || |||||||||| || || | |||| || Sbjct 462270 AGCAGGAAACGTAGGTCATCAGGTCAACCAATTTAAAGTGATCATGTCAAGGCAAAGCAT 462211 Query 1666 TAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGAC 1725 |||| | || || ||||| ||||| || | ||| || |||||||||||||||||||| Sbjct 462210 TAGACTAGACCAGAAAGGAAAAGGCAGCAGATCAATAGAGCCAACTCCAGTAATTATGAC 462151 Query 1726 AACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGA-AAGACCTGAACATACAC 1784 | || | ||| || | || |||||||| || |||| |||||||| || | Sbjct 462150 CAGCAACAAGGGTATCACCACAGTCAGAATTGGTTG-CAAGATCAGACCTGAGCACAGTG 462092 Query 1785 AACCAATAAGAGACAGA 1801 ||||| | | | ||||| Sbjct 462091 AACCACTGAAACACAGA 462075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16921074557880