Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq33 215 2e-52 seq132 208 2e-50 >seq33 Length=23381312 Score = 215 bits (238), Expect = 2e-52 Identities = 290/401 (72%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 1441 CTAAACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGA 1500 |||| || |||| |||| ||||| ||||| || || || || |||||| |||||| Sbjct 14639980 CTAAGCAAACAACTGAGAAAGAGAAACACAATACTCTTACAAGGACCAGCAAGCACAGGA 14639921 Query 1501 AAAAGTATAATTGCTCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCA 1560 |||||| |||| || ||| | || | || ||||||||| |||| ||||| || || Sbjct 14639920 AAAAGTCTAATAGCACAAAAAATAAGTGAATTGGTTGGTAATATTGGATGCTATAACCCA 14639861 Query 1561 GCCAATGTGAACTTTCCATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGAA 1620 || | | |||||||||||||| | || || ||||| | || ||||| ||||| Sbjct 14639860 GCAGACATAAACTTTCCATTTAACCATTGCTGTAACAAAAATATCATTTGGATAGAAGAG 14639801 Query 1621 GCAGGAAACTTCTCTAACCAAGTAAACCAATTCAAAGCCATATGTTCAGGTCAAACAATT 1680 ||||||| | | | ||||| |||||||||||||||||| | || |||| || Sbjct 14639800 GCAGGAATCCTAGGACAGCAAGTCAACCAATTCAAAGCCATAATGCCTGGACAAAGCATA 14639741 Query 1681 AGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGTAATAATGACT 1740 ||| | ||||||||||| ||||| |||| ||| ||||||||||| ||||| ||||| Sbjct 14639740 AGACTAGACCAAAAAGGAAAAGGCTCCAAATCAATAGAACCAACTCCGGTAATTATGACA 14639681 Query 1741 ACAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGACCAGAACATACACAA 1800 | ||||| ||||| || | || ||||||||||| || ||||| |||| | || Sbjct 14639680 AGTAATGAGGACATCACAATTGTCAGAATAGGATGTGAAATTAGACCTAAACACTCTGAA 14639621 Query 1801 CCAATAAGAGACAGAATGT-TAAACATAAACCTAACCAGAA 1840 ||||| | | |||| |||| | ||||| || || |||| || Sbjct 14639620 CCAATTAAACACAG-ATGTGTTAACATTAAACTCACCAAAA 14639581 Score = 86.0 bits (94), Expect = 2e-13 Identities = 115/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 2384 ACAGGACTA-ACTCTACCAGGATACAAATACCTTGGTCCAGGAAACTCACTAGACCAAGG 2442 ||||| ||| ||| ||||||| |||||||||||||| ||||| ||| |||| |||||| | Sbjct 14639092 ACAGG-CTATACTTTACCAGGCTACAAATACCTTGGACCAGGCAACACACTTGACCAAAG 14639034 Query 2443 AGAACCAACTAATCCATCAGACGCCGCAGCAAAAGAACACGACGAAGCCTACGA-CAAAT 2501 ||||||| |||| ||| || || || | | | ||||||||| ||| | | || Sbjct 14639033 AGAACCAGCTAACCCAAGTGATAAAGCTGCCAGACAGCACGACGAACATTACCATCTTAT 14638974 Query 2502 ACATAAAATCTGGAAAAAATCCATACTTCTACTTC 2536 || | ||| || || || || ||||||| |||| Sbjct 14638973 TCA-ACAATTAGGTAATAACCCTTACTTCTTCTTC 14638940 Score = 80.6 bits (88), Expect = 9e-12 Identities = 121/170 (71%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 3117 CACAAATGGTAACACCTTGGTCACTAATAGATGCTAACGCATGGGGAGTGTGGTTCAATC 3176 ||||||| |||||||||||| ||| |||||||| | ||||||||||| ||| | | || Sbjct 14638416 CACAAATACTAACACCTTGGTTCCTATTAGATGCTGATGCATGGGGAGTTTGGATGAGTC 14638357 Query 3177 CAGCGGA---CTGGCAGTTAATATCCAACAACATGACAGAA-ATAAACTTAGTTAGTTTT 3232 ||| || || || || || |||||||| || || || | ||| || || Sbjct 14638356 CAGGAGATTTCTACCATCTA----CCCACAACATGTCAAAACTTACAGCTAGAAAGCTTA 14638301 Query 3233 GAACAAGAAATATTCAATGTAGTACTTAAAACAATTACAGAATCAGCAAC 3282 || |||||||| || || || |||||||| | || ||| ||||||| Sbjct 14638300 GAGCAAGAAATTTTTAACATATCCATTAAAACAGTAACGGAAACAGCAAC 14638251 >seq132 Length=3867412 Score = 208 bits (230), Expect = 2e-50 Identities = 296/409 (72%), Gaps = 8/409 (2%) Strand=Plus/Minus Query 1411 ATTAAAGTCTGCCATGCTATAACTTGTGTA--CTAAACAGACAAGGAGGAAAAAGAAATA 1468 ||||||||||||||||| || | |||| | || |||| |||| |||||| |||| | Sbjct 462479 ATTAAAGTCTGCCATGCCATCA--TGTGCAGTCTCAACAAACAACTAGGAAAGAGAAGCA 462422 Query 1469 CAATTCTATTTCATGGGCCAGCATCAACAGGAAAAAGTATAATTGCTCAACACAT-TGCA 1527 | | ||| | || || |||||| |||||||||||| | | |||||| | || || Sbjct 462421 CTACCCTACTACAGGGACCAGCAGACACAGGAAAAAGTCTCTTAGCTCAAAAAATCTGTG 462362 Query 1528 AACTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAATGAC 1587 || || |||||||| |||| |||||||| |||| || | |||||||| || |||||| Sbjct 462361 AATTT-GTTGGTAACATTGGCTGCTACAACCCAGCTAACTTAAACTTTCCTTTCAATGAC 462303 Query 1588 TGTACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAAC 1647 | || ||| || |||||||| |||| |||||||||||| | | | || || ||| Sbjct 462302 TCCTGCAACAAATACATAATATGGGTTGAGGAAGCAGGAAACGTAGGTCATCAGGTCAAC 462243 Query 1648 CAATTCAAAGCCAT-ATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAG 1706 ||||| |||| || ||| ||| | |||| |||||| | ||||| ||||| ||||| || Sbjct 462242 CAATTTAAAGTGATCATG-TCAAGGCAAAGCATTAGACTAGACCAGAAAGGAAAAGGCAG 462184 Query 1707 CAAACAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAG 1766 || | ||| || |||||||| ||||| ||||| | || | | || || | ||| || Sbjct 462183 CAGATCAATAGAGCCAACTCCAGTAATTATGACCAGCAACAAGGGTATCACCACAGTCAG 462124 Query 1767 AATAGGATGCGAGGAAAGACCAGAACATACACAACCAATAAGAGACAGA 1815 ||| || ||| || ||||| || || | ||||| | | | ||||| Sbjct 462123 AATTGGTTGCAAGATCAGACCTGAGCACAGTGAACCACTGAAACACAGA 462075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16127499200400