Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq50 217 4e-53 seq12 132 1e-27 >seq50 Length=18100965 Score = 217 bits (240), Expect = 4e-53 Identities = 532/797 (67%), Gaps = 17/797 (2%) Strand=Plus/Minus Query 985 GGTACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGA 1044 |||||| || || ||| ||||| ||| ||| ||||| || || || ||| Sbjct 18095306 GGTACACGGCCCTCGTCCAATGGCTCGTGCGGAACGGCATCACCTCCGAGCAGGCTTGGG 18095247 Query 1045 TTCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGA 1104 | ||||||| | ||||||| | |||||| |||| || ||||| | ||| Sbjct 18095246 CGCGGGAGGACTGCGACTCGTACGTGTCCTTCCACGCGTCCAAGGACTCGAGAGGTCAGG 18095187 Query 1105 TCAAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGCCTGACAAAGACGGCTCCGGACT 1164 ||||||| || ||| ||||||| || | | | | ||||| ||||| || | |||| Sbjct 18095186 TCAAGGCGGCCCTGCGCAATGCCCGCACGCT---GTGTCTGACCAAGACCGCGGCAGACT 18095130 Query 1165 ACCTGGTGG-GCAGCAACCCGCCGGAGGACATTACCAAAAATCGGATCTACCAAATCCTG 1223 ||||||||| | ||| || ||| | |||||| | || || |||||| || | Sbjct 18095129 ACCTGGTGGCGGAGCGCGCCCCCG-ACGACATTCGGCAGAACCGTGTCTACCGCCTCTTC 18095071 Query 1224 GAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAG 1283 || ||| | ||||| ||| ||||||| | | | ||||| ||| ||| || Sbjct 18095070 AGCCTCAACAGCTACGAGCCGGCCTACGCGGGAAGCCTGCTGCTGGGGTGGT-GCACCAG 18095012 Query 1284 A-AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAA 1342 ||||||||||| | |||||| | |||||||| || ||| || |||| || || ||||| Sbjct 18095011 GGAGTTCGGGAAGCGAAACACCGTATGGCTCTTCGGACCGCCCTCGACCGGCAAGACCAA 18094952 Query 1343 CATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGA 1402 | | ||||| |||||||| ||| |||||||| | | || ||||| | |||||| ||| Sbjct 18094951 CCTGGCGGAGGCCATCGCTCACACCGTGCCCATGTTCGAATGCGTCAGCTGGACGAATAG 18094892 Query 1403 GAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGAT 1462 ||||| || |||| || ||||||| || ||| | |||||||||||||| || ||||| Sbjct 18094891 CAACTTCCCTTTCAGAGACTGCGTCGGAAAAATGCTCATCTGGTGGGAGGAAGGGAAGAT 18094832 Query 1463 GACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGA 1522 |||| ||| | | || || |||||| | || || || |||||| ||| Sbjct 18094831 GACGTCCAGAATGCTCGAATCAGCTAAGGCCGTCCTAGGGGGCTCTGCGGTGCGTGTGCC 18094772 Query 1523 CCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACAC 1582 || ||| | || || |||||| || ||||| || || ||| ||||||||| | Sbjct 18094771 TCAGAAGCGGGAGGTCTCCAGCCAGATAGAGCCCACCCCGGTCATCATCACCTCCAGCCA 18094712 Query 1583 CAACATGTGCGCCGTGATTGACGGGAACAGCACCA--CCTTCGAGCATCAGCAGCCGCTG 1640 |||||||| | | | ||||| ||| ||| |||| | || | | || | ||| Sbjct 18094711 GGACATGTGCAGCATCGTGGACGG--ACACGCCCAGGCCTTGGCACACCGGAAGGCCCTG 18094654 Query 1641 CAGGACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAGGTC 1700 |||| || ||||| || | |||| | | || | || ||||||||| || Sbjct 18094653 GAGGAGCGCATGTTCAAACTAAAACTGGACAAGAGGCTGCCTCCGGAGTTTGGGAAGATC 18094594 Query 1701 ACCAAACAGGAAGTAAAGGACTTTTTCCGGTGGGCTTCCGATCAC---GTGACTGACGTG 1757 |||| ||||| || ||| || || |||||| ||| || ||| | |||| Sbjct 18094593 ACCAGGCAGGAGGTGCGGGAGTTCCTCGCGTGGGCCCGCGAGAACAGGGTGCC---CGTG 18094537 Query 1758 GCTCATGAGTTCTACGT 1774 | |||||||||| ||| Sbjct 18094536 GAGCATGAGTTCTGCGT 18094520 >seq12 Length=33761702 Score = 132 bits (146), Expect = 1e-27 Identities = 266/388 (69%), Gaps = 6/388 (2%) Strand=Plus/Plus Query 1398 AATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1457 ||| | ||||||||||||| | | | || || ||| | |||||||||| ||||| Sbjct 22669255 AATAAAAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22669313 Query 1458 AAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCG-GAAGCAAGGTGCG 1516 |||||||| |||||||| || || | || |||| ||| || | | |||||||| || Sbjct 22669314 AAGATGACAGCCAAGGTGGTAGAATCCCTCACAGCCACTCTTGGGGAGCAGCAAGGTCCG 22669373 Query 1517 CGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTC 1576 ||||| | || | || || || | | | || | | ||| | || || | | Sbjct 22669374 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGATCAG 22669433 Query 1577 CAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCC 1636 ||||| |||||||| || || |||| || || ||| |||| ||||| |||||| Sbjct 22669434 GAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTTGGAGCACCAGCAGTG 22669493 Query 1637 GCTGCAGGACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGA-CTTTGGGA 1695 || || ||| |||||| |||| | || | | || |||| ||| |||||| | Sbjct 22669494 CCTCCAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAAT-TGAGCTTTGGCA 22669552 Query 1696 AGGTCACCAAACAGGAAGTAAAGGAC--TTTTTCCGGTGGGCTTCCGATCACGTGACTGA 1753 | ||||||||||||| || || ||| ||||||| ||||||||| |||||| || || Sbjct 22669553 AAATCACCAAACAGGAGGTCAAAGACTTTTTTTCCAGTGGGCTTCTGATCACAGGAGGGA 22669612 Query 1754 CGTGGCTCATGAGTTCTACGTCAGAAAG 1781 ||| || | ||||| ||||| ||| Sbjct 22669613 AGTGACTGAGGAGTTTGTGGTCAGGAAG 22669640 Score = 102 bits (112), Expect = 2e-18 Identities = 233/344 (68%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 1398 AATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1457 ||| ||||||||||||||| | | | || || ||| | |||||||||| ||||| Sbjct 22702389 AATAAGAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22702447 Query 1458 AAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCG-GAAGCAAGGTGCG 1516 ||||| || |||||||| || || | || |||| | | || | | |||||||| || Sbjct 22702448 AAGATAACAGCCAAGGTGGTAGAATCCCTCACAGCCAGTGTTGGGGAGCAGCAAGGTCCG 22702507 Query 1517 CGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTC 1576 ||||| | || | || || || | | | || | | ||| | || || | | Sbjct 22702508 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGAACAG 22702567 Query 1577 CAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCC 1636 |||||| |||||||| || || |||| || || ||| ||| ||||| |||||| Sbjct 22702568 CAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTGGGAGCACCAGCAGTG 22702627 Query 1637 GCTGCAGGACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGA-CTTTGGGA 1695 || | ||| |||||| |||| | || | | || |||| ||| |||||| | Sbjct 22702628 CCTCTAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAAT-TGAGCTTTGGCA 22702686 Query 1696 AGGTCACCAAACAGGAAGTAAAGGAC-TTTTTCCGGTGGGCTTC 1738 | ||||||||||||| || || ||| ||||||| | |||||| Sbjct 22702687 AAATCACCAAACAGGAGGTCAAAGACTTTTTTCCCTTTGGCTTC 22702730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010733878785