Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq50 215 2e-52 seq12 158 4e-35 >seq50 Length=18100965 Score = 215 bits (238), Expect = 2e-52 Identities = 493/734 (67%), Gaps = 11/734 (1%) Strand=Plus/Minus Query 1039 GGTACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGA 1098 |||||| || || ||| ||||| ||| ||| ||||| || || || ||| Sbjct 18095306 GGTACACGGCCCTCGTCCAATGGCTCGTGCGGAACGGCATCACCTCCGAGCAGGCTTGGG 18095247 Query 1099 TCCAGGAGGACCAGGCGTCCTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAAA 1158 | ||||||| | || ||| | |||||| |||| || ||||| | || Sbjct 18095246 CGCGGGAGGACTGCGACTCGTACGTGTCCTTCCACGCGTCCAAGGACTCGAGAGGTCAGG 18095187 Query 1159 TCAAGGCCGCGCTGGACAATGCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACT 1218 ||||||| || ||| ||||||| || | | | ||||| ||||| || | |||| Sbjct 18095186 TCAAGGCGGCCCTGCGCAATGCCCGCACGCT---GTGTCTGACCAAGACCGCGGCAGACT 18095130 Query 1219 ACCTGGTGGGCCAGAACCCGCCGGAGGACATTTC-CAGCAACCGCATCTACCGAATCCTC 1277 ||||||||| || | | || || |||||| ||| ||||| ||||||| || || Sbjct 18095129 ACCTGGTGGCGGAGCGCGCCCCCGACGACATTCGGCAG-AACCGTGTCTACCGCCTCTTC 18095071 Query 1278 GAGATGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAG 1337 | ||| | ||||| ||| ||||||| | | | ||||| ||| ||| || Sbjct 18095070 AGCCTCAACAGCTACGAGCCGGCCTACGCGGGAAGCCTGCTGCTGGGGTGGT-GCACCAG 18095012 Query 1338 A-AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAA 1396 ||||||||||| | |||||| | |||||||| || ||| || |||| || || ||||| Sbjct 18095011 GGAGTTCGGGAAGCGAAACACCGTATGGCTCTTCGGACCGCCCTCGACCGGCAAGACCAA 18094952 Query 1397 CATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGA 1456 | | ||||| |||||||| ||| |||||||| | | || ||||| | |||||| ||| Sbjct 18094951 CCTGGCGGAGGCCATCGCTCACACCGTGCCCATGTTCGAATGCGTCAGCTGGACGAATAG 18094892 Query 1457 GAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGAT 1516 ||||| || |||| || ||||||| || ||| | |||||||||||||| || ||||| Sbjct 18094891 CAACTTCCCTTTCAGAGACTGCGTCGGAAAAATGCTCATCTGGTGGGAGGAAGGGAAGAT 18094832 Query 1517 GACGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGA 1576 |||| ||| | | || || |||||| |||| || || |||||| ||| Sbjct 18094831 GACGTCCAGAATGCTCGAATCAGCTAAGGCCGTCCTAGGGGGCTCTGCGGTGCGTGTGCC 18094772 Query 1577 CCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACAC 1636 || ||| | || || |||||| || || || || || ||| ||||||||| | Sbjct 18094771 TCAGAAGCGGGAGGTCTCCAGCCAGATAGAGCCCACCCCGGTCATCATCACCTCCAGCCA 18094712 Query 1637 CAACATGTGCGCGGTCATCGACGGAAACTCGACCA--CCTTCGAGCACCAACAACCACTC 1694 |||||||| || | ||||| || || ||| |||| | |||| | | || Sbjct 18094711 GGACATGTGCAGCATCGTGGACGG--ACACGCCCAGGCCTTGGCACACCGGAAGGCCCTG 18094654 Query 1695 CAGGACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTC 1754 |||| || |||||||| | | || |||| | ||| | || ||||| ||| || Sbjct 18094653 GAGGAGCGCATGTTCAAACTAAAACTGGACAAGAGGCTGCCTCCGGAGTTTGGGAAGATC 18094594 Query 1755 ACCAAGCAGGAAGT 1768 |||| |||||| || Sbjct 18094593 ACCAGGCAGGAGGT 18094580 >seq12 Length=33761702 Score = 158 bits (174), Expect = 4e-35 Identities = 289/415 (70%), Gaps = 9/415 (2%) Strand=Plus/Plus Query 1452 AATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1511 ||| | |||||||| |||| | | | || || ||| | |||||||||| ||||| Sbjct 22669255 AATAAAAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22669313 Query 1512 AAGATGACGGCCAAGGTCGTAGAGAGCGCCAAGGCCA-TCCTGGGCGGAAGCAAGGTGCG 1570 |||||||| |||||||| ||||| | || |||| || |||| | |||||||| || Sbjct 22669314 AAGATGACAGCCAAGGTGGTAGAATCCCTCACAGCCACTCTTGGGGAGCAGCAAGGTCCG 22669373 Query 1571 CGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTC 1630 ||||| | || | || || || | | | |||| || ||| | || || | | Sbjct 22669374 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGATCAG 22669433 Query 1631 CAACACCAACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACC 1690 ||||| |||||||| | | | || ||||| | |||| |||| |||||||| || Sbjct 22669434 GAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTTGGAGCACCAGCAGTG 22669493 Query 1691 ACTCCAGGACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAA 1750 ||||| ||| |||||| || || |||| | | | ||||| ||||||||| Sbjct 22669494 CCTCCAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAATTGAGCTTTGGCAA 22669553 Query 1751 GGTCACCAAGCAGGAAGTCAAAGAC--TTTTTCCGGTGGGCGTCAGATCACGTGACCGAG 1808 ||||||| ||||| ||||||||| ||||||| |||||| || |||||| || || Sbjct 22669554 AATCACCAAACAGGAGGTCAAAGACTTTTTTTCCAGTGGGCTTCTGATCACAGGAGGGAA 22669613 Query 1809 GTGACTCACGAGTTTTACGTCAGAAAGGGTGGA--GCTAGAAAGAGGCCC-GCCC 1860 |||||| | |||||| ||||| || | |||| || || ||||| ||| |||| Sbjct 22669614 GTGACTGAGGAGTTTGTGGTCAGGAA-GCTGGACTGC-AGGAAGAGACCCAGCCC 22669666 Score = 120 bits (132), Expect = 9e-24 Identities = 226/330 (68%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 1452 AATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1511 ||| |||||||||| |||| | | | || || ||| | |||||||||| ||||| Sbjct 22702389 AATAAGAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22702447 Query 1512 AAGATGACGGCCAAGGTCGTAGAGAGCGCCAAGGCCA-TCCTGGGCGGAAGCAAGGTGCG 1570 ||||| || |||||||| ||||| | || |||| | |||| | |||||||| || Sbjct 22702448 AAGATAACAGCCAAGGTGGTAGAATCCCTCACAGCCAGTGTTGGGGAGCAGCAAGGTCCG 22702507 Query 1571 CGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTC 1630 ||||| | || | || || || | | | |||| || ||| | || || | | Sbjct 22702508 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGAACAG 22702567 Query 1631 CAACACCAACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACC 1690 |||||| |||||||| | | | || ||||| | |||| ||| |||||||| || Sbjct 22702568 CAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTGGGAGCACCAGCAGTG 22702627 Query 1691 ACTCCAGGACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAA 1750 ||| | ||| |||||| || || |||| | | | ||||| ||||||||| Sbjct 22702628 CCTCTAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAATTGAGCTTTGGCAA 22702687 Query 1751 GGTCACCAAGCAGGAAGTCAAAGACTTTTT 1780 ||||||| ||||| |||||||||||||| Sbjct 22702688 AATCACCAAACAGGAGGTCAAAGACTTTTT 22702717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15141929804820