Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq50 286 1e-73 seq12 132 1e-27 >seq50 Length=18100965 Score = 286 bits (316), Expect = 1e-73 Identities = 532/766 (69%), Gaps = 25/766 (3%) Strand=Plus/Minus Query 1037 GGCATCACCTCCGAGAAGCAGTGGATCCAGGAGGACCAGGCCTCGTACATCTCCTTCAAC 1096 ||||||||||||||| || ||| | ||||||| | ||||||| | |||||| || Sbjct 18095271 GGCATCACCTCCGAGCAGGCTTGGGCGCGGGAGGACTGCGACTCGTACGTGTCCTTCCAC 18095212 Query 1097 GCCGCTTCCAA---CTCGCGGTCCCAGATCAAGGCCGCTCTGGACAATGCCGGCAAGATC 1153 || ||||| |||| | ||| ||||||| || ||| ||||||| ||| | | Sbjct 18095211 GCG---TCCAAGGACTCGAGAGGTCAGGTCAAGGCGGCCCTGCGCAATGCCCGCACGCTG 18095155 Query 1154 ATGGCGCTGACCAAATCCGCGCCCGACTACCTGGTAG-GCCCCGCTCCGCCCGCGGACAT 1212 || | ||||||| ||||| | ||||||||||| | | ||| || |||| ||||| Sbjct 18095154 -TGTC--TGACCAAGACCGCGGCAGACTACCTGGTGGCGGAGCGCGCC-CCCGACGACAT 18095099 Query 1213 TAAAACCAACCGCATCTACCGCATCCTGGAGCTGAACGGCTACGAACCTGCCTACGCCGG 1272 | ||||| |||||||| || | || ||| ||||||| || |||||||| || Sbjct 18095098 TCGGCAGAACCGTGTCTACCGCCTCTTCAGCCTCAACAGCTACGAGCCGGCCTACGCGGG 18095039 Query 1273 CTCCGTCTTTCTCGGCTGG-GC-CCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTG 1330 | | | || || ||| || |||| | |||||||||||| |||||| | ||||| Sbjct 18095038 AAGCCTGCTGCTGGGGTGGTGCACCAGGGA--GTTCGGGAAGCGAAACACCGTATGGCTC 18094981 Query 1331 TTTGGGCCGGCCACCACGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCC 1390 || || ||| || | || |||||||||||| | ||||| |||||||| ||| |||||||| Sbjct 18094980 TTCGGACCGCCCTCGACCGGCAAGACCAACCTGGCGGAGGCCATCGCTCACACCGTGCCC 18094921 Query 1391 TTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAG 1450 | | || ||||||| |||||| ||| ||||| || |||| || ||||||| || Sbjct 18094920 ATGTTCGAATGCGTCAGCTGGACGAATAGCAACTTCCCTTTCAGAGACTGCGTCGGAAAA 18094861 Query 1451 ATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCC 1510 ||| | |||||||||||||| || ||||||||| ||| | | || || || |||||| Sbjct 18094860 ATGCTCATCTGGTGGGAGGAAGGGAAGATGACGTCCAGAATGCTCGAATCAGCTAAGGCC 18094801 Query 1511 ATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGAC 1570 | || || ||| |||||| ||| || ||| | || ||| |||||| || Sbjct 18094800 GTCCTAGGGGGCTCTGCGGTGCGTGTGCCTCAGAAGCGGGAGGTCTCCAGCCAGATAGAG 18094741 Query 1571 CCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGC 1630 |||||||| || ||| ||||||||| | |||||||| | | | ||||| ||| Sbjct 18094740 CCCACCCCGGTCATCATCACCTCCAGCCAGGACATGTGCAGCATCGTGGACGG--ACACG 18094683 Query 1631 ACCA--CCTTCGAGCACCAGCAGCCGTTGCAGGACCGGATGTTCAAATTTGAACTCACCC 1688 ||| |||| | |||| | || | || |||| || ||||||||| | |||| | Sbjct 18094682 CCCAGGCCTTGGCACACCGGAAGGCCCTGGAGGAGCGCATGTTCAAACTAAAACTGGACA 18094623 Query 1689 GCCGTCTGGAGCATGACTTTGGCAAGGTGACAAAGCAGGAAGTCAAAGAGTTCTTCCGCT 1748 | ||| | || ||||| ||| | || | |||||| || |||||| || | Sbjct 18094622 AGAGGCTGCCTCCGGAGTTTGGGAAGATCACCAGGCAGGAGGTGCGGGAGTTCCTCGCGT 18094563 Query 1749 GGG--CGCAGGATCA-CGTGACCGAGGTGGCGCATGAGTTCTACGT 1791 ||| ||| || || ||| || |||| ||||||||||| ||| Sbjct 18094562 GGGCCCGCGAGAACAGGGTGCCC---GTGGAGCATGAGTTCTGCGT 18094520 >seq12 Length=33761702 Score = 132 bits (146), Expect = 1e-27 Identities = 266/388 (69%), Gaps = 6/388 (2%) Strand=Plus/Plus Query 1415 AATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1474 ||| | ||||||||||||| || | | || || ||| | |||||||||| ||||| Sbjct 22669255 AATAAAAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22669313 Query 1475 AAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCG-GCAGCAAGGTGCG 1533 |||||||| |||||||| || || ||| || |||| ||| || | |||||||||| || Sbjct 22669314 AAGATGACAGCCAAGGTGGTAGAATCCCTCACAGCCACTCTTGGGGAGCAGCAAGGTCCG 22669373 Query 1534 CGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTC 1593 ||||| | || | || || || | | | |||| | || | || || | | Sbjct 22669374 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGATCAG 22669433 Query 1594 CAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCC 1653 ||||| |||||||| || || |||| || || ||| |||| |||||||||||| Sbjct 22669434 GAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTTGGAGCACCAGCAGTG 22669493 Query 1654 GTTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGA-CTTTGGCA 1712 | || ||| |||||| || |||| | || | | ||||||| ||| |||||||| Sbjct 22669494 CCTCCAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGA-ATTGAGCTTTGGCA 22669552 Query 1713 AGGTGACAAAGCAGGAAGTCAAAGA--GTTCTTCCGCTGGGCGCAGGATCACGTGACCGA 1770 | | || || ||||| |||||||| || |||| ||||| |||||| || || Sbjct 22669553 AAATCACCAAACAGGAGGTCAAAGACTTTTTTTCCAGTGGGCTTCTGATCACAGGAGGGA 22669612 Query 1771 GGTGGCGCATGAGTTCTACGTCAGAAAG 1798 ||| | | ||||| ||||| ||| Sbjct 22669613 AGTGACTGAGGAGTTTGTGGTCAGGAAG 22669640 Score = 123 bits (136), Expect = 7e-25 Identities = 229/331 (69%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 1415 AATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1474 ||| ||||||||||||||| || | | || || ||| | |||||||||| ||||| Sbjct 22702389 AATAAGAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22702447 Query 1475 AAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCG-GCAGCAAGGTGCG 1533 ||||| || |||||||| || || ||| || |||| | | || | |||||||||| || Sbjct 22702448 AAGATAACAGCCAAGGTGGTAGAATCCCTCACAGCCAGTGTTGGGGAGCAGCAAGGTCCG 22702507 Query 1534 CGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTC 1593 ||||| | || | || || || | | | |||| | || | || || | | Sbjct 22702508 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGAACAG 22702567 Query 1594 CAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCC 1653 |||||| |||||||| || || |||| || || ||| ||| |||||||||||| Sbjct 22702568 CAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTGGGAGCACCAGCAGTG 22702627 Query 1654 GTTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGA-CTTTGGCA 1712 | | ||| |||||| || |||| | || | | ||||||| ||| |||||||| Sbjct 22702628 CCTCTAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGA-ATTGAGCTTTGGCA 22702686 Query 1713 AGGTGACAAAGCAGGAAGTCAAAGAGTTCTT 1743 | | || || ||||| |||||||| || || Sbjct 22702687 AAATCACCAAACAGGAGGTCAAAGACTTTTT 22702717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985134673705