Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq50 215 2e-52 >seq50 Length=18100965 Score = 215 bits (238), Expect = 2e-52 Identities = 509/759 (67%), Gaps = 21/759 (3%) Strand=Plus/Minus Query 907 TACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAGGAATGGCTG 966 |||| || ||||| | ||||||||| ||| || |||||| ||||| ||| ||| | Sbjct 18095304 TACACGGCCCTCGTCCAATGGCTCGTGCGGAACGGCATCACCTCCGAGCAGGCTTGGGCG 18095245 Query 967 CTGGAAAACAGAGAAAGCTTTCG-GAGCTTTCAGGCCTCGAGCAACTCGGCGCGTCAGAT 1025 | ||| || | || | | || | ||| || || || | ||||| ||||| | Sbjct 18095244 CGGGAGGACTGCGACT-CGTACGTGTCCTTCCACGCGTCCAAGGACTCGAGAGGTCAGGT 18095186 Query 1026 CAAGACGGCCCTGCAAGGCGCCATTCAGGA--GATGCTTCTGACCAAGACGGCGGAGGAC 1083 |||| ||||||||| || || | | | || |||||||||||| |||| ||| Sbjct 18095185 CAAGGCGGCCCTGC-----GCAATGCCCGCACGCTGTGTCTGACCAAGACCGCGGCAGAC 18095131 Query 1084 TACCTCGTCGGAAAGGATCCCGTCTCGGACGACGACATCCGTCAGAACCGCATCTACAAG 1143 ||||| || | ||| | || | | ||||||||| || |||||||| ||||| | Sbjct 18095130 TACCTGGTGGC---GGAGCGCGCCCC---CGACGACATTCGGCAGAACCGTGTCTACC-G 18095078 Query 1144 ATTCTGGAAC-TGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGGGTGGTG 1202 ||| | | | ||| |||||| || || |||| ||| || | || | |||||||| Sbjct 18095077 CCTCTTCAGCCTCAACAGCTACGAGCCGGCCTACGCGGGAAGCCTGCTGCTGGGGTGGTG 18095018 Query 1203 CCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAA 1262 | | | | | || ||||||||||| | ||||| ||||||| | | |||||||| Sbjct 18095017 CACCAGGGAGTTCGGGAAGCGAAACACCGTATGGCTCTTCGGACCGCCCTCGACCGGCAA 18094958 Query 1263 GACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGAC 1322 ||||||| | |||||||| || || || | ||||| | | | |||||| | |||||| Sbjct 18094957 GACCAACCTGGCGGAGGCCATCGCTCACACCGTGCCCATGTTCGAATGCGTCAGCTGGAC 18094898 Query 1323 CAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGG 1382 || ||||| || |||| |||||||||| ||||||| | |||||||||||||| || Sbjct 18094897 GAATAGCAACTTCCCTTTCAGAGACTGCGTCGGAAAAATGCTCATCTGGTGGGAGGAAGG 18094838 Query 1383 CAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTGAG 1442 || ||||| ||| | || | ||| |||| ||||| | || || || ||| |||| | Sbjct 18094837 GAAGATGACGTCCAGAATGCTCGAATCAGCTAAGGCCGTCCTAGGGGGCTCTGCGGTGCG 18094778 Query 1443 AGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAG 1502 ||| || || | | | || | ||| || || || |||||||| || ||| Sbjct 18094777 TGTGCCTCAGAAGCGGGAGGTCTCCAGCCAGATAGAGCCCACCCCGGTCATCATCACCTC 18094718 Query 1503 TAACACCAACATGTGTTATGTCATCGACGGGAACACGACCA--CGTTCGAGCATAAGCAG 1560 | | ||||||| || | ||||| ||||| ||| | || | || | || Sbjct 18094717 CAGCCAGGACATGTGCAGCATCGTGGACGG--ACACGCCCAGGCCTTGGCACACCGGAAG 18094660 Query 1561 CCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTGACTCGGTTGCCTGATGACTTTGGT 1620 | ||||||| | ||||| || || || || | || ||||| || ||||| Sbjct 18094659 GCCCTGGAGGAGCGCATGTTCAAACTAAAACTGGACAAGAGGCTGCCTCCGGAGTTTGGG 18094600 Query 1621 AAGGTGACCAAACAGGAGGTGCGTCAATTCTTCAGGTGG 1659 ||| | |||| ||||||||||| | ||| || |||| Sbjct 18094599 AAGATCACCAGGCAGGAGGTGCGGGAGTTCCTCGCGTGG 18094561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14908337058465