Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq50 172 2e-39 >seq50 Length=18100965 Score = 172 bits (190), Expect = 2e-39 Identities = 327/488 (67%), Gaps = 0/488 (0%) Strand=Plus/Minus Query 1265 CTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGTGCACTCGCGCC 1324 |||||| ||||||| ||||| |||||||| | || || |||||||| | | Sbjct 18095067 CTCAACAGCTACGAGCCGGCCTACGCGGGAAGCCTGCTGCTGGGGTGGTGCACCAGGGAG 18095008 Query 1325 TTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATC 1384 || || ||| | |||||||| ||||| | ||||| | | ||||| ||||||||| | Sbjct 18095007 TTCGGGAAGCGAAACACCGTATGGCTCTTCGGACCGCCCTCGACCGGCAAGACCAACCTG 18094948 Query 1385 GCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAAC 1444 ||||| |||||| |||||||||||||| | | | || || | |||||| ||| ||| Sbjct 18094947 GCGGAGGCCATCGCTCACACCGTGCCCATGTTCGAATGCGTCAGCTGGACGAATAGCAAC 18094888 Query 1445 TTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACC 1504 || | ||||||| | |||||||||||||| || |||||||| Sbjct 18094887 TTCCCTTTCAGAGACTGCGTCGGAAAAATGCTCATCTGGTGGGAGGAAGGGAAGATGACG 18094828 Query 1505 AGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGATCAA 1564 || || | ||| | || |||||| || | ||||| ||| || || ||| ||| Sbjct 18094827 TCCAGAATGCTCGAATCAGCTAAGGCCGTCCTAGGGGGCTCTGCGGTGCGTGTGCCTCAG 18094768 Query 1565 AAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTAAC 1624 || | | ||| || |||| | |||||||| || |||||||||| || Sbjct 18094767 AAGCGGGAGGTCTCCAGCCAGATAGAGCCCACCCCGGTCATCATCACCTCCAGCCAGGAC 18094708 Query 1625 ATGTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGAC 1684 ||||| | ||||| || || || | |||| | ||||| | || | ||||| || Sbjct 18094707 ATGTGCAGCATCGTGGACGGACACGCCCAGGCCTTGGCACACCGGAAGGCCCTGGAGGAG 18094648 Query 1685 CGCATGTTCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCAAGATTACCAAG 1744 |||||||||| | | |||| | |||| || || || ||||| ||||| |||| | Sbjct 18094647 CGCATGTTCAAACTAAAACTGGACAAGAGGCTGCCTCCGGAGTTTGGGAAGATCACCAGG 18094588 Query 1745 CAGGAAGT 1752 ||||| || Sbjct 18094587 CAGGAGGT 18094580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14905137157830