Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq50 109 2e-20 >seq50 Length=18100965 Score = 109 bits (120), Expect = 2e-20 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 1533 GAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTA 1592 |||| || ||||||||| |||||| | | ||||| ||||||||| | || ||||| | Sbjct 18094997 GAAACACCGTATGGCTCTTCGGACCGCCCTCGACCGGCAAGACCAACCTGGCGGAGGCCA 18094938 Query 1593 TTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTA 1652 | || || | || ||| | | | || || | |||||| ||| |||||||| || | Sbjct 18094937 TCGCTCACACCGTGCCCATGTTCGAATGCGTCAGCTGGACGAATAGCAACTTCCCTTTCA 18094878 Query 1653 ATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAG 1712 |||||||| | |||||||| || ||||||||||| || || ||||| | | | Sbjct 18094877 GAGACTGCGTCGGAAAAATGCTCATCTGGTGGGAGGAAGGGAAGATGACGTCCAGAATGC 18094818 Query 1713 TGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTACGAGT 1755 | ||||| || || || | || ||||| ||||| || || || Sbjct 18094817 TCGAATCAGCTAAGGCCGTCCTAGGGGGCTCTGCGGTGCGTGT 18094775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16309893536595