Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq50 269 8e-69 seq35 127 6e-26 seq12 127 6e-26 >seq50 Length=18100965 Score = 269 bits (298), Expect = 8e-69 Identities = 514/751 (68%), Gaps = 7/751 (1%) Strand=Plus/Minus Query 1016 TACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATC 1075 |||| ||| |||||| | ||||||||| | |||||||||| |||||| || ||| Sbjct 18095304 TACACGGCCCTCGTCCAATGGCTCGTGCGGAACGGCATCACCTCCGAGCAGGCTTGGGCG 18095245 Query 1076 CAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGATC 1135 | ||| | || ||| | |||||| || | || |||| | | ||| || Sbjct 18095244 CGGGAGGACTGCGACTCGTACGTGTCCTTCCACGCGTCCAAGGACTCGAGAGGTCAGGTC 18095185 Query 1136 AAGGCCGCGCTCGACAACGCGACCAAAATTATGAGTCTGACAAAAAGCGCGGTGGACTAC 1195 ||||| || || ||| || || | | ||||||| || | ||||| |||||| Sbjct 18095184 AAGGCGGCCCTGCGCAATGCCCGCACGCT---GTGTCTGACCAAGACCGCGGCAGACTAC 18095128 Query 1196 CTCGTGG-GGAGCTCCGTTCCCGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGA 1254 || |||| ||||| | | ||||| |||||| | ||| | ||| | | || Sbjct 18095127 CTGGTGGCGGAGCGC-GCCCCCGACGACATTCGGCAGAACCGTGTCTACCGCCTCTTCAG 18095069 Query 1255 GATGAATGGCTACGACCCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGC-GCT 1313 | || ||||||| ||||||||||||||| | | || || ||||| || | | Sbjct 18095068 CCTCAACAGCTACGAGCCGGCCTACGCGGGAAGCCTGCTGCTGGGGTGGTG-CACCAGGG 18095010 Query 1314 CCTTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACA 1373 ||| ||| | |||||||| ||||||| |||||| || ||||||||||||||||| Sbjct 18095009 AGTTCGGGAAGCGAAACACCGTATGGCTCTTCGGACCGCCCTCGACCGGCAAGACCAACC 18094950 Query 1374 TCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAA 1433 | |||||||||||||| ||||| |||||| | | || ||||| | |||||| ||| | Sbjct 18094949 TGGCGGAGGCCATCGCTCACACCGTGCCCATGTTCGAATGCGTCAGCTGGACGAATAGCA 18094890 Query 1434 ACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGA 1493 |||| || || | ||||| || | ||||||||||| ||||||||||| || ||||||| Sbjct 18094889 ACTTCCCTTTCAGAGACTGCGTCGGAAAAATGCTCATCTGGTGGGAGGAAGGGAAGATGA 18094830 Query 1494 CCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATC 1553 | || || | ||||| || |||||| |||| |||||||| |||||| || || Sbjct 18094829 CGTCCAGAATGCTCGAATCAGCTAAGGCCGTCCTAGGGGGCTCTGCGGTGCGTGTGCCTC 18094770 Query 1554 AGAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAA 1613 |||| | | ||| || || || | ||||| ||||| | || |||| Sbjct 18094769 AGAAGCGGGAGGTCTCCAGCCAGATAGAGCCCACCCCGGTCATCATCACCTCCAGCCAGG 18094710 Query 1614 ACATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGG 1673 ||||||| | ||||| || | || | |||| | ||||| | || | ||||||| Sbjct 18094709 ACATGTGCAGCATCGTGGACGGACACGCCCAGGCCTTGGCACACCGGAAGGCCCTGGAGG 18094650 Query 1674 ACCGCATGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCAGATTTTGGCAAGATTACTA 1733 | |||||||||||| | ||||| ||| |||| || || || ||||| ||||| || | Sbjct 18094649 AGCGCATGTTCAAACTAAAACTGGACAAGAGGCTGCCTCCGGAGTTTGGGAAGATCACCA 18094590 Query 1734 AGCAGGAAGTCAAGGACTTTTTTGCTTGGGC 1764 |||||| || ||| || | || ||||| Sbjct 18094589 GGCAGGAGGTGCGGGAGTTCCTCGCGTGGGC 18094559 >seq35 Length=22390816 Score = 127 bits (140), Expect = 6e-26 Identities = 248/356 (70%), Gaps = 13/356 (4%) Strand=Plus/Minus Query 2808 TGGGCGACAATAACCAAGGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCG 2867 |||| ||||||||||| |||| | || | | ||||||| |||| ||| || | | Sbjct 13654535 TGGGTGACAATAACCAGGGTGTCTATAGGAAGACTGATGCCTCAGGAGGTTGACACTCAG 13654476 Query 2868 ATTCCACGTGGATGGGGGACAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCA 2927 | ||| ||||||| | ||||| | |||| | || ||| || |||||| |||||| Sbjct 13654475 ACTCCCAGTGGATGAGAAACAGACT--TCACTATGTTCACATGACTCTGGGTCCTGCCCC 13654418 Query 2928 GCTACAACAACCACCAGTACCGAGAGATCAAAAGCGGCTCCGTCGA-CGGAAGCAA-CGC 2985 ||||||||||| || || |||| || | | || | |||| || | Sbjct 13654417 ---ACAACAACCACTT-TATTGACAGATTTCTAGTTGTGGAG--GATCAGAAGAAAACAT 13654364 Query 2986 CAACGCCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAG 3045 | | ||||||||||| |||||| | ||| |||| ||||||||||||| |||||||| Sbjct 13654363 CTGTGTCTACTTTGGATGCAGCACTCTTTGGAGGTATTTTGACTTTAACCAATTCCACAG 13654304 Query 3046 CCACTGGAG-CCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCC 3104 ||| ||||| |||| |||||| ||||| |||| |||| || || |||| ||| | | | Sbjct 13654303 CCATTGGAGTCCCCAGAGACTAGCAAATACTCTCCAACTACCACAGGGG-TTCTGTCTCA 13654245 Query 3105 GGTCCCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGGTGCAGGAC 3160 |||| || ||| ||| || || || |||||||| |||| | ||||| || Sbjct 13654244 AAAGTCTCAAAG-AAAAGACTTTAATATCCATGTCAAAGAAGTCATGATGCAGAAC 13654190 >seq12 Length=33761702 Score = 127 bits (140), Expect = 6e-26 Identities = 232/334 (69%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 1427 AATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGA 1486 ||| ||||||||||||| | || | |||| |||||| | | |||||||| ||||| Sbjct 22669255 AATAAAAACTTTCCCTTCAGTGGC-CCCTGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22669313 Query 1487 AAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCA-TCCTGGGGGGCTCAAAGGTGCG 1545 |||||||| ||||||||| |||||| || |||| || ||||| || ||||| || Sbjct 22669314 AAGATGACAGCCAAGGTGGTAGAATCCCTCACAGCCACTCTTGGGGAGCAGCAAGGTCCG 22669373 Query 1546 GGTCGATCAGAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTC 1605 || ||| ||||| ||||||| || | | || | || | |||| |||||| | Sbjct 22669374 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGATCAG 22669433 Query 1606 CAATACAAACATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCC 1665 || || ||||||| |||| ||||| |||| || |||| || ||||||||| Sbjct 22669434 GAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTTGGAGCACCAGCAGTG 22669493 Query 1666 GCTGGAGGACCGCATGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCA--GA-TTTTGG 1722 || | ||| | |||| || |||| | ||| | | | || | | || ||||| Sbjct 22669494 CCTCCAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCT---GGAATTGAGCTTTGG 22669550 Query 1723 CAAGATTACTAAGCAGGAAGTCAAGGACTTTTTT 1756 ||| || || || ||||| ||||| ||||||||| Sbjct 22669551 CAAAATCACCAAACAGGAGGTCAAAGACTTTTTT 22669584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14741942225445