Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq50 293 7e-76 seq12 129 2e-26 >seq50 Length=18100965 Score = 293 bits (324), Expect = 7e-76 Identities = 530/763 (69%), Gaps = 19/763 (2%) Strand=Plus/Minus Query 1036 GGCATCACCTCCGAGAAGCAGTGGATCCAGGAGGACCAGGCCTCGTACATCTCCTTCAAC 1095 ||||||||||||||| || ||| | ||||||| | ||||||| | |||||| || Sbjct 18095271 GGCATCACCTCCGAGCAGGCTTGGGCGCGGGAGGACTGCGACTCGTACGTGTCCTTCCAC 18095212 Query 1096 GCCGCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCTGGACAATGCCGGCAAGATCATG 1155 || || ||||| | ||| ||||||| || ||| ||||||| ||| | | || Sbjct 18095211 GCGTCCAAGGACTCGAGAGGTCAGGTCAAGGCGGCCCTGCGCAATGCCCGCACGCTG-TG 18095153 Query 1156 GCGCTGACCAAATCCGCGCCCGACTACCTGGTGG-GGCCCTCGCTGCCCGCGGACATTAA 1214 | ||||||| ||||| | ||||||||||||| || | ||| |||| |||||| Sbjct 18095152 TC--TGACCAAGACCGCGGCAGACTACCTGGTGGCGGAGCGCGCC-CCCGACGACATTCG 18095096 Query 1215 AACCAACCGCATCTACCGCATCCTGGAGCTGAACGGGTACGATCCTGCCTACGCCGGCTC 1274 ||||| |||||||| || | || ||| | ||||| || |||||||| || Sbjct 18095095 GCAGAACCGTGTCTACCGCCTCTTCAGCCTCAACAGCTACGAGCCGGCCTACGCGGGAAG 18095036 Query 1275 CGTCTTTCTCGGCTGG-GC-CCAGAAAAAGTTCGGGAAGCGCAACACCATCTGGCTGTTT 1332 | | | || || ||| || |||| | |||||||||||| |||||| | ||||| || Sbjct 18095035 CCTGCTGCTGGGGTGGTGCACCAGGGA--GTTCGGGAAGCGAAACACCGTATGGCTCTTC 18094978 Query 1333 GGGCCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTC 1392 || || || | ||||||||||||||| | ||||| |||||||| ||| |||||||| | Sbjct 18094977 GGACCGCCCTCGACCGGCAAGACCAACCTGGCGGAGGCCATCGCTCACACCGTGCCCATG 18094918 Query 1393 TACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATG 1452 | || ||||||| |||||| ||| ||||| || |||| || ||||||| || ||| Sbjct 18094917 TTCGAATGCGTCAGCTGGACGAATAGCAACTTCCCTTTCAGAGACTGCGTCGGAAAAATG 18094858 Query 1453 GTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATT 1512 | |||||||||||||| || ||||||||| ||| | | || || || |||||| | Sbjct 18094857 CTCATCTGGTGGGAGGAAGGGAAGATGACGTCCAGAATGCTCGAATCAGCTAAGGCCGTC 18094798 Query 1513 CTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCC 1572 || || ||| |||||| ||| || ||| | || ||| |||||| || ||| Sbjct 18094797 CTAGGGGGCTCTGCGGTGCGTGTGCCTCAGAAGCGGGAGGTCTCCAGCCAGATAGAGCCC 18094738 Query 1573 ACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACC 1632 ||||| || ||| ||||||||| | |||||||| | | | ||||| ||| || Sbjct 18094737 ACCCCGGTCATCATCACCTCCAGCCAGGACATGTGCAGCATCGTGGACGG--ACACGCCC 18094680 Query 1633 A--CCTTCGAGCACCAGCAGCCGTTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCC 1690 | |||| | |||| | || | || |||| || ||||||||| | |||| | Sbjct 18094679 AGGCCTTGGCACACCGGAAGGCCCTGGAGGAGCGCATGTTCAAACTAAAACTGGACAAGA 18094620 Query 1691 GTCTGGAGCACGACTTTGGCAAGGTGACGAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGG 1750 | ||| | || ||||| ||| | || | |||||| || |||||| || |||| Sbjct 18094619 GGCTGCCTCCGGAGTTTGGGAAGATCACCAGGCAGGAGGTGCGGGAGTTCCTCGCGTGGG 18094560 Query 1751 CCAGTGATCAC---GTGACCGAGGTGGCGCATGAGTTCTACGT 1790 || | || || ||| || |||| ||||||||||| ||| Sbjct 18094559 CCCGCGAGAACAGGGTGCCC---GTGGAGCATGAGTTCTGCGT 18094520 >seq12 Length=33761702 Score = 129 bits (142), Expect = 2e-26 Identities = 263/387 (68%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 1414 AATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1473 ||| | ||||||||||||| | | | || || ||| | |||||||||| ||||| Sbjct 22669255 AATAAAAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22669313 Query 1474 AAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCG-GCAGCAAGGTGCG 1532 |||||||| |||||||| || || ||| || |||| ||| || | |||||||||| || Sbjct 22669314 AAGATGACAGCCAAGGTGGTAGAATCCCTCACAGCCACTCTTGGGGAGCAGCAAGGTCCG 22669373 Query 1533 CGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTC 1592 ||||| | || | || || || | | | |||| | || | || || | | Sbjct 22669374 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGATCAG 22669433 Query 1593 CAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCC 1652 ||||| |||||||| || || |||| || || ||| |||| |||||||||||| Sbjct 22669434 GAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTTGGAGCACCAGCAGTG 22669493 Query 1653 GTTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAA 1712 | || ||| |||||| || |||| | || | | ||||||| ||||||||| Sbjct 22669494 CCTCCAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAATTGAGCTTTGGCAA 22669553 Query 1713 GGTGACGAAGCAGGAAGTCAAAGA--GTTCTTCCGCTGGGCCAGTGATCACGTGACCGAG 1770 | || || ||||| |||||||| || |||| ||||| ||||||| || || Sbjct 22669554 AATCACCAAACAGGAGGTCAAAGACTTTTTTTCCAGTGGGCTTCTGATCACAGGAGGGAA 22669613 Query 1771 GTGGCGCATGAGTTCTACGTCAGAAAG 1797 ||| | | ||||| ||||| ||| Sbjct 22669614 GTGACTGAGGAGTTTGTGGTCAGGAAG 22669640 Score = 114 bits (126), Expect = 4e-22 Identities = 225/330 (68%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 1414 AATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1473 ||| ||||||||||||||| | | | || || ||| | |||||||||| ||||| Sbjct 22702389 AATAAGAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22702447 Query 1474 AAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCG-GCAGCAAGGTGCG 1532 ||||| || |||||||| || || ||| || |||| | | || | |||||||||| || Sbjct 22702448 AAGATAACAGCCAAGGTGGTAGAATCCCTCACAGCCAGTGTTGGGGAGCAGCAAGGTCCG 22702507 Query 1533 CGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTC 1592 ||||| | || | || || || | | | |||| | || | || || | | Sbjct 22702508 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGAACAG 22702567 Query 1593 CAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCC 1652 |||||| |||||||| || || |||| || || ||| ||| |||||||||||| Sbjct 22702568 CAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTGGGAGCACCAGCAGTG 22702627 Query 1653 GTTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAA 1712 | | ||| |||||| || |||| | || | | ||||||| ||||||||| Sbjct 22702628 CCTCTAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAATTGAGCTTTGGCAA 22702687 Query 1713 GGTGACGAAGCAGGAAGTCAAAGAGTTCTT 1742 | || || ||||| |||||||| || || Sbjct 22702688 AATCACCAAACAGGAGGTCAAAGACTTTTT 22702717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994734375610