Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq50 304 4e-79 seq12 134 4e-28 >seq50 Length=18100965 Score = 304 bits (336), Expect = 4e-79 Identities = 531/762 (70%), Gaps = 17/762 (2%) Strand=Plus/Minus Query 935 GGCATCACCTCCGAGAAGCAGTGGATCCAGGAGGACCAGGCCTCGTACATCTCCTTCAAC 994 ||||||||||||||| || ||| | ||||||| | ||||||| | |||||| || Sbjct 18095271 GGCATCACCTCCGAGCAGGCTTGGGCGCGGGAGGACTGCGACTCGTACGTGTCCTTCCAC 18095212 Query 995 GCCGCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCTGGACAATGCCGGCAAGATCATG 1054 || || ||||| | ||| ||||||| || ||| ||||||| ||| | | || Sbjct 18095211 GCGTCCAAGGACTCGAGAGGTCAGGTCAAGGCGGCCCTGCGCAATGCCCGCACGCTG-TG 18095153 Query 1055 GCGCTGACCAAATCCGCGCCCGACTACCTGGTGG-GGCCCTCGCTGCCCGCGGACATTAC 1113 | ||||||| ||||| | ||||||||||||| || | ||| |||| |||||| Sbjct 18095152 TC--TGACCAAGACCGCGGCAGACTACCTGGTGGCGGAGCGCGCC-CCCGACGACATTCG 18095096 Query 1114 CCAGAACCGCATCTACCGCATCCTCGCTCTCAACGGCTACGACCCTGCCTACGCCGGCTC 1173 |||||||| |||||||| || || |||||| ||||||| || |||||||| || Sbjct 18095095 GCAGAACCGTGTCTACCGCCTCTTCAGCCTCAACAGCTACGAGCCGGCCTACGCGGGAAG 18095036 Query 1174 CGTCTTTCTCGGCTGG-GCTCAGAAAAAGTTCGGGAAACGCAACACCATCTGGCTGTTTG 1232 | | | || || ||| || | | |||||||||| || |||||| | ||||| || | Sbjct 18095035 CCTGCTGCTGGGGTGGTGCACC-AGGGAGTTCGGGAAGCGAAACACCGTATGGCTCTTCG 18094977 Query 1233 GACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCT 1292 |||| || | ||||||||||||||| | ||||| |||||||| ||| |||||||| | | Sbjct 18094976 GACCGCCCTCGACCGGCAAGACCAACCTGGCGGAGGCCATCGCTCACACCGTGCCCATGT 18094917 Query 1293 ACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGG 1352 || ||||||| |||||| ||| ||||| || |||| || ||||||| || ||| Sbjct 18094916 TCGAATGCGTCAGCTGGACGAATAGCAACTTCCCTTTCAGAGACTGCGTCGGAAAAATGC 18094857 Query 1353 TGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTC 1412 | |||||||||||||| || ||||||||| ||| | | || || || |||||| | | Sbjct 18094856 TCATCTGGTGGGAGGAAGGGAAGATGACGTCCAGAATGCTCGAATCAGCTAAGGCCGTCC 18094797 Query 1413 TCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCA 1472 | || ||| |||||| ||| || ||| | || ||| |||||| || |||| Sbjct 18094796 TAGGGGGCTCTGCGGTGCGTGTGCCTCAGAAGCGGGAGGTCTCCAGCCAGATAGAGCCCA 18094737 Query 1473 CCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCA 1532 |||| || ||| ||||||||| | |||||||| | | | ||||| ||| ||| Sbjct 18094736 CCCCGGTCATCATCACCTCCAGCCAGGACATGTGCAGCATCGTGGACGG--ACACGCCCA 18094679 Query 1533 --CCTTCGAGCACCAGCAGCCTCTCCAGGACCGGATGTTTAAGTTCGAACTCACCCGCCG 1590 |||| | |||| | || | || |||| || ||||| || | |||| | | Sbjct 18094678 GGCCTTGGCACACCGGAAGGCCCTGGAGGAGCGCATGTTCAAACTAAAACTGGACAAGAG 18094619 Query 1591 TCTGGAGCACGACTTTGGCAAGGTGACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGC 1650 ||| | || ||||| ||| | || | |||||| || |||||| || ||||| Sbjct 18094618 GCTGCCTCCGGAGTTTGGGAAGATCACCAGGCAGGAGGTGCGGGAGTTCCTCGCGTGGGC 18094559 Query 1651 CAGTGATCAC---GTGACCGAGGTGGCGCATGAGTTTTACGT 1689 | | || || ||| || |||| ||||||||| | ||| Sbjct 18094558 CCGCGAGAACAGGGTGCCC---GTGGAGCATGAGTTCTGCGT 18094520 >seq12 Length=33761702 Score = 134 bits (148), Expect = 4e-28 Identities = 264/387 (68%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 1313 AATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1372 ||| | ||||||||||||| || | | || || ||| | |||||||||| ||||| Sbjct 22669255 AATAAAAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22669313 Query 1373 AAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCG-GCAGCAAGGTGCG 1431 |||||||| |||||||| || || ||| || |||| ||| || | |||||||||| || Sbjct 22669314 AAGATGACAGCCAAGGTGGTAGAATCCCTCACAGCCACTCTTGGGGAGCAGCAAGGTCCG 22669373 Query 1432 CGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTC 1491 ||||| | || | || || || | | | |||| | || | || || | | Sbjct 22669374 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGATCAG 22669433 Query 1492 CAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCC 1551 ||||| |||||||| || || |||| || || ||| |||| |||||||||||| Sbjct 22669434 GAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTTGGAGCACCAGCAGTG 22669493 Query 1552 TCTCCAGGACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAA 1611 ||||| ||| |||||| | || | || | | ||||||| ||||||||| Sbjct 22669494 CCTCCAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAATTGAGCTTTGGCAA 22669553 Query 1612 GGTGACAAAGCAGGAAGTCAAAGA--GTTCTTCCGCTGGGCCAGTGATCACGTGACCGAG 1669 | || || ||||| |||||||| || |||| ||||| ||||||| || || Sbjct 22669554 AATCACCAAACAGGAGGTCAAAGACTTTTTTTCCAGTGGGCTTCTGATCACAGGAGGGAA 22669613 Query 1670 GTGGCGCATGAGTTTTACGTCAGAAAG 1696 ||| | | |||||| ||||| ||| Sbjct 22669614 GTGACTGAGGAGTTTGTGGTCAGGAAG 22669640 Score = 114 bits (126), Expect = 4e-22 Identities = 225/330 (68%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 1313 AATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1372 ||| ||||||||||||||| || | | || || ||| | |||||||||| ||||| Sbjct 22702389 AATAAGAACTTTCCCTTCAGTGGCCCC-TGGATAAAATGATTGTCTGGTGGGAAGAGGGG 22702447 Query 1373 AAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCG-GCAGCAAGGTGCG 1431 ||||| || |||||||| || || ||| || |||| | | || | |||||||||| || Sbjct 22702448 AAGATAACAGCCAAGGTGGTAGAATCCCTCACAGCCAGTGTTGGGGAGCAGCAAGGTCCG 22702507 Query 1432 CGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTC 1491 ||||| | || | || || || | | | |||| | || | || || | | Sbjct 22702508 TGTGGATGAGAAAGGTAAATCTTCAGATGAACTGGACCAAAGTCCTGCCATTGTGAACAG 22702567 Query 1492 CAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCC 1551 |||||| |||||||| || || |||| || || ||| ||| |||||||||||| Sbjct 22702568 CAACACTGACATGTGCACCTTGGTTGATGGAAATTAGACCGCCTGGGAGCACCAGCAGTG 22702627 Query 1552 TCTCCAGGACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAA 1611 ||| | ||| |||||| | || | || | | ||||||| ||||||||| Sbjct 22702628 CCTCTAAGACTGGATGTCCACATTTCAGCTGGCATACAGTCTGGAATTGAGCTTTGGCAA 22702687 Query 1612 GGTGACAAAGCAGGAAGTCAAAGAGTTCTT 1641 | || || ||||| |||||||| || || Sbjct 22702688 AATCACCAAACAGGAGGTCAAAGACTTTTT 22702717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13945166967330