Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq50 199 1e-47 >seq50 Length=18100965 Score = 199 bits (220), Expect = 1e-47 Identities = 374/543 (69%), Gaps = 15/543 (3%) Strand=Plus/Minus Query 907 TACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAGGAATGGCTG 966 |||| || ||||| | ||||||||| ||| || |||||| ||||| ||| ||| | Sbjct 18095304 TACACGGCCCTCGTCCAATGGCTCGTGCGGAACGGCATCACCTCCGAGCAGGCTTGGGCG 18095245 Query 967 CTGGAAAACAGAGAAAGCTTTCG-GAGCTTCCAGGCCTCGAGCAACTCGGCGCGTCAGAT 1025 | ||| || | || | | || | |||||| || || | ||||| ||||| | Sbjct 18095244 CGGGAGGACTGCGACT-CGTACGTGTCCTTCCACGCGTCCAAGGACTCGAGAGGTCAGGT 18095186 Query 1026 CAAGACGGCCCTGCAAGGCGCCAT-CCAGGA-GATGCTTCTGACCAAGACGGCGGAGGAC 1083 |||| ||||||||| || || || | | | || |||||||||||| |||| ||| Sbjct 18095185 CAAGGCGGCCCTGC-----GCAATGCCCGCACGCTGTGTCTGACCAAGACCGCGGCAGAC 18095131 Query 1084 TACCTCGTCGGAAAAGAACCCGTCTCGGACGACGAGATTCGTCAGAACCGCATCTACAAG 1143 ||||| || | || | || | | |||||| ||||| |||||||| ||||| Sbjct 18095130 TACCTGGTGGCG---GAGCGCGCCCCCGACGAC---ATTCGGCAGAACCGTGTCTACCGC 18095077 Query 1144 ATTTTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGGGTGGTGC 1203 | || || ||| |||||| || || |||| ||| || | || | ||||||||| Sbjct 18095076 CTCTTCAGCCTCAACAGCTACGAGCCGGCCTACGCGGGAAGCCTGCTGCTGGGGTGGTGC 18095017 Query 1204 CAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAG 1263 | | | | || ||||||||||| | ||||| |||||||| | | ||||||||| Sbjct 18095016 ACCAGGGAGTTCGGGAAGCGAAACACCGTATGGCTCTTCGGACCGCCCTCGACCGGCAAG 18094957 Query 1264 ACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACC 1323 |||||| | |||||||| || || || | ||||| | | | |||||| | |||||| Sbjct 18094956 ACCAACCTGGCGGAGGCCATCGCTCACACCGTGCCCATGTTCGAATGCGTCAGCTGGACG 18094897 Query 1324 AACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGC 1383 || ||||| || |||| |||||||||| ||| ||| | ||||||||||| || || Sbjct 18094896 AATAGCAACTTCCCTTTCAGAGACTGCGTCGGAAAAATGCTCATCTGGTGGGAGGAAGGG 18094837 Query 1384 AAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCGGGTGAGA 1443 || ||||| ||| || | ||| | ||||| || | || || || ||| |||| | Sbjct 18094836 AAGATGACGTCCAGAATGCTCGAATCAGCTAAGGCCGTCCTAGGGGGCTCTGCGGTGCGT 18094777 Query 1444 GTG 1446 ||| Sbjct 18094776 GTG 18094774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14869938250845