Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq50 322 1e-84 >seq50 Length=18100965 Score = 322 bits (356), Expect = 1e-84 Identities = 528/755 (70%), Gaps = 15/755 (2%) Strand=Plus/Minus Query 848 TACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGTGGATG 907 |||| ||| |||||| ||||||||| ||||||||| | |||||| | ||| | Sbjct 18095304 TACACGGCCCTCGTCCAATGGCTCGTGCGGAACGGCATCACCTCCGAGCAGGCTTGGGCG 18095245 Query 908 CGCGAGGACTCGGACGGGTACCTGAGCTACAACGCCACGGGCGCCACGCGCGCCCAGATC 967 || ||||||| ||| |||| || || | |||| | | | || | | ||| || Sbjct 18095244 CGGGAGGACTGCGACTCGTACGTGTCCTTCCACGCGTCCAAGGACTCGAGAGGTCAGGTC 18095185 Query 968 AAGGCCGCGCTCGACAACGCGGCCCGCATCATG-GTCAACACGAAGACGGCCGCCGACTA 1026 ||||| || || ||| || ||||| || ||| || ||||| || || ||||| Sbjct 18095184 AAGGCGGCCCTGCGCAATGC---CCGCACGCTGTGTCTG-ACCAAGACCGCGGCAGACTA 18095129 Query 1027 CCTGGTCGGCAGGAACCCGCCCCT--CGACGTGGAGGACAACAGGATCTACCGGCTGTTT 1084 |||||| ||| ||| | |||||| |||| | | | ||| | ||||||| || || Sbjct 18095128 CCTGGT-GGC-GGAGCGCGCCCCCGACGACATTCGGCAGAACCGTGTCTACCGCCTCTTC 18095071 Query 1085 CGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCCGCACC 1144 || | ||| ||||||| || ||||||||||| ||| ||||||| || |||||| || Sbjct 18095070 AGCCTCAACAGCTACGAGCCGGCCTACGCGGGAAGCCTGCTGCTGGGGTGGTGCACCAGG 18095011 Query 1145 GGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAAC 1204 | ||||| ||||| |||||||| ||||||||||| ||| || ||||||||||||| ||| Sbjct 18095010 GAGTTCGGGAAGCGAAACACCGTATGGCTCTTCGGACCGCCCTCGACCGGCAAGACCAAC 18094951 Query 1205 CTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAG 1264 || || ||||||||| ||| | |||||| | | || ||||||| |||||| || Sbjct 18094950 CTGGCGGAGGCCATCGCTCACACCGTGCCCATGTTCGAATGCGTCAGCTGGACGAATAGC 18094891 Query 1265 AACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATG 1324 |||||||| |||| |||||||| | || ||| |||||||||||||||| || |||||| Sbjct 18094890 AACTTCCCTTTCAGAGACTGCGTCGGAAAAATGCTCATCTGGTGGGAGGAAGGGAAGATG 18094831 Query 1325 ACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTCGAC 1384 ||||||| | |||| || |||||| |||| || ||| |||||| || Sbjct 18094830 ACGTCCAGAATGCTCGAATCAGCTAAGGCCGTCCTAGGGGGCTCTGCGGTGCGTGTGCCT 18094771 Query 1385 CAGAAGTGCAAGAACTCGCAG-CAGATCGAGCCCACGCCCGTCATNNNNNNNNNNNNNNN 1443 |||||| | || ||| ||| ||||| |||||||| || ||||| Sbjct 18094770 CAGAAGCGGGAGGTCTC-CAGCCAGATAGAGCCCACCCCGGTCATCATCACCTCCAGCCA 18094712 Query 1444 NNACATGTGCGAGGTCGTCGACGGGAACTCGACCA--CGTTCGAGCACCGGCAGCCGCTC 1501 |||||||| |||| ||||| || || ||| | || | |||||| || | || Sbjct 18094711 GGACATGTGCAGCATCGTGGACGG--ACACGCCCAGGCCTTGGCACACCGGAAGGCCCTG 18094654 Query 1502 GAGGACAGGATGTTCAAGTTCGAGCTCACCGTCAGGCTGCAGCCCACCTTCGGCAAGATC 1561 ||||| | |||||||| | | || | ||||||| || || || |||||| Sbjct 18094653 GAGGAGCGCATGTTCAAACTAAAACTGGACAAGAGGCTGCCTCCGGAGTTTGGGAAGATC 18094594 Query 1562 ACCAAGCAGGAGGTGCGCGAGTTCTTTAAGTGGGC 1596 |||| |||||||||||| |||||| | |||||| Sbjct 18094593 ACCAGGCAGGAGGTGCGGGAGTTCCTCGCGTGGGC 18094559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13602777599385