Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq132 250 7e-63 seq33 235 2e-58 >seq132 Length=3867412 Score = 250 bits (276), Expect = 7e-63 Identities = 353/488 (72%), Gaps = 10/488 (2%) Strand=Plus/Minus Query 1135 AAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATC 1194 ||||||| |||||| || |||||| | || ||||||||| | || || |||| || | | Sbjct 462476 AAAGTCTGCCATGCCATCATGTGCAGTCTCAACAAACAACTAGGAAAGAGAAGCACTACC 462417 Query 1195 TTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTA 1254 |||| ||||| ||| |||||||||||| || ||||||||||||| |||| Sbjct 462416 CTACTACAGGGACCAGCAGACACAGGAAAAAGTCTCTTAGCTCAAAAAATCTGTGAATTT 462357 Query 1255 GTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTA 1314 |||||||||| ||||||||||| ||| || ||||| || |||||||||| Sbjct 462356 GTTGGTAACATTGGCTGCTACAACCCAGCTAACTTAAACTTTCCTTTCAATGACTCCTGC 462297 Query 1315 AACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTTC 1374 |||||| || |||| ||| | || |||||||| ||| |||| ||| || ||| || Sbjct 462296 AACAAATACATAATATGGGTTGAGGAAGCAGGAAACGTAGGTCATCAGGTCAACCAATTT 462237 Query 1375 AAAGCCATCATGAGT-GGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATC 1433 |||| |||||| ||| ||||| | ||||| ||||| ||||| |||||||||| ||| Sbjct 462236 AAAGTGATCATGTCAAGGCAAAGCATT-AGACTAGACCAGAAAGGAAAAGGCAGCAGATC 462178 Query 1434 AATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCAAAGT---AATAGT 1490 ||| || |||||||||||||| ||||| | ||| | | ||||||| ||| ||| | Sbjct 462177 AATAGAGCCAACTCCAGTAATTATGACCAGCAACAAGGGTATCACCACAGTCAGAATTGG 462118 Query 1491 TGGCACAGAACTCAAAACAGAACACAGACAACCAATAATGGATAGATGCTTAAGAATTGA 1550 | ||| ||| ||| | | || ||||| ||||| | | | ||||| | | ||| Sbjct 462117 TTGCA-AGA--TCAGACCTGAGCACAGTGAACCACTGAAACACAGATGTGTCAATATTAG 462061 Query 1551 ACTCAAAAACAAACTAAG-TGGTGATCATGGCTTGTTAGAAGATACTGAACTACCAGCTA 1609 ||||| || || || || |||| | || ||||||||| ||| ||| ||||| || Sbjct 462060 ACTCACCAA-AACCTTAGATGGTAAGTTTGATTTGTTAGAAAATAAAGAAATACCAAATA 462002 Query 1610 TCTTCAAA 1617 |||||||| Sbjct 462001 TCTTCAAA 461994 >seq33 Length=23381312 Score = 235 bits (260), Expect = 2e-58 Identities = 358/503 (71%), Gaps = 10/503 (2%) Strand=Plus/Minus Query 1153 ATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATCTTACTCTGT---GGACCT 1209 |||||||| || | ||||||| || | || ||||| || || ||||| ||||| Sbjct 14639989 ATGTGCTGTCTAAGCAAACAACTGAGAAAGAGAAACACAAT---ACTCTTACAAGGACCA 14639933 Query 1210 GCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTTGGTAACACAGGC 1269 ||||||||||||||||| ||| |||| ||||||||| |||| |||||||| | || Sbjct 14639932 GCAAGCACAGGAAAAAGTCTAATAGCACAAAAAATAAGTGAATTGGTTGGTAATATTGGA 14639873 Query 1270 TGCTACAATCCAAGCA-ATGCCAACTTCCCATTCAATGACTG-TGTAAACAAAAACCTAA 1327 ||||| || ||| ||| | ||||| ||||| || | || ||||| |||||| | | Sbjct 14639872 TGCTATAACCCA-GCAGACATAAACTTTCCATTTAACCATTGCTGTAA-CAAAAATATCA 14639815 Query 1328 TCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTTCAAAGCCATCATGA 1387 | ||||||||||| ||||| | |||||| ||||| ||| ||||||||||| ||| Sbjct 14639814 TTTGGATAGAAGAGGCAGGAATCCTAGGACAGCAAGTCAACCAATTCAAAGCCATAATGC 14639755 Query 1388 GTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTC 1447 ||| ||| || ||||| ||||||||||| |||||| ||||||||| |||||||||| Sbjct 14639754 CTGGACAAAGCATAAGACTAGACCAAAAAGGAAAAGGCTCCAAATCAATAGAACCAACTC 14639695 Query 1448 CAGTAATCATGACAACCAATGAAGACATCACCAAAGTAATAGTTGGCACAGAACTCAAAA 1507 | ||||| ||||||| ||||| |||||||| | || | | | || ||| | | | Sbjct 14639694 CGGTAATTATGACAAGTAATGAGGACATCACAATTGTCAGAATAGGATGTGAAATTAGAC 14639635 Query 1508 CAGAACACAGACAACCAATAATGGATAGATGCTTAAGAATTGAACTCAAAAACAAACTAA 1567 | ||||| ||||||| | | ||||| | | ||| |||||| || | || Sbjct 14639634 CTAAACACTCTGAACCAATTAAACACAGATGTGTTAACATTAAACTCACCAAAACTTTAG 14639575 Query 1568 GTGGTGATCATGGCTTGTTAGAAGATACTGAACTACCAGCTATCTTCAAATACCTAGAAG 1627 |||| ||| || | ||| ||| ||| ||||| || || || | |||||| Sbjct 14639574 ATGGTAGGTTTGGTTTAATTGAAAATAAAGAAATACCATAGATATTTAAGACCTTAGAAG 14639515 Query 1628 GACATGGATTTTATCCAACCATG 1650 || ||||| | ||||||| ||| Sbjct 14639514 AACTTGGATATCATCCAACAATG 14639492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15033133183230