Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq33 302 1e-78 seq132 223 1e-54 >seq33 Length=23381312 Score = 302 bits (334), Expect = 1e-78 Identities = 370/501 (74%), Gaps = 8/501 (2%) Strand=Plus/Minus Query 1194 CCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAAC 1253 |||||||||||| || || |||||||||||||| ||||||| || | || |||||| Sbjct 14640013 CCATACAAAGTAACACACACAGCGATGTGCTGTCTAAGCAAACAACTGAGAAAGAGAAAC 14639954 Query 1254 ACAAT---CTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATT 1310 ||||| ||||| || |||||||| || |||||||| ||||||||||||||||| Sbjct 14639953 ACAATACTCTTACAA---GGACCAGCAAGCACAGGAAAAAGTCTAATAGCACAAAAAATA 14639897 Query 1311 GCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCA-ATGTTAACTTTCCATTCAA 1369 | |||||||||||||| | |||||||| || ||| ||| | | ||||||||||| || Sbjct 14639896 AGTGAATTGGTTGGTAATATTGGATGCTATAACCCA-GCAGACATAAACTTTCCATTTAA 14639838 Query 1370 CGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGT 1429 | |||| | |||||||| | || ||||||||||| ||||||| | | ||| ||||| Sbjct 14639837 CCATTGCTGTAACAAAAATATCATTTGGATAGAAGAGGCAGGAATCCTAGGACAGCAAGT 14639778 Query 1430 AAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGG 1489 |||||||| ||||| || ||| ||| ||| || ||||||||||||||||| ||||| Sbjct 14639777 CAACCAATTCAAAGCCATAATGCCTGGACAAAGCATAAGACTAGACCAAAAAGGAAAAGG 14639718 Query 1490 TAGCAAAACCATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGT 1549 |||| | || ||||||||||| || || ||||||| ||||| ||||| |||| || Sbjct 14639717 CTCCAAATCAATAGAACCAACTCCGGTAATTATGACAAGTAATGAGGACATCACAATTGT 14639658 Query 1550 TGTGGTAGGGTCTGAACTTAGACCAGAACATAAACAACCAATCATGGACAGATGTATTCG 1609 |||| | |||| ||||||| |||| ||||||| | |||||||| || Sbjct 14639657 CAGAATAGGATGTGAAATTAGACCTAAACACTCTGAACCAATTAAACACAGATGTGTTAA 14639598 Query 1610 TGTACATCTGACCACAAGACTTCCTGGCGACTTTGGTTTACTTGATGATGAAGAGATACC 1669 | | || |||| || | ||| ||||||||| |||| || |||| ||||| Sbjct 14639597 CATTAAACTCACCAAAACTTTAGATGGTAGGTTTGGTTTAATTGAAAATAAAGAAATACC 14639538 Query 1670 AACTATTTTTAAAAAATTAGA 1690 | || ||||| | ||||| Sbjct 14639537 ATAGATATTTAAGACCTTAGA 14639517 >seq132 Length=3867412 Score = 223 bits (246), Expect = 1e-54 Identities = 247/327 (76%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 1200 AAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAACACAATC 1259 ||||| | ||||| || |||||| |||| ||||||||| | || || |||| ||| | | Sbjct 462476 AAAGTCTGCCATGCCATCATGTGCAGTCTCAACAAACAACTAGGAAAGAGAAGCACTACC 462417 Query 1260 TTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATTGCTCAATTG 1319 |||| || |||||| || |||||||| || |||| |||||||| | |||| Sbjct 462416 CTACTACAGGGACCAGCAGACACAGGAAAAAGTCTCTTAGCTCAAAAAATCTGTGAATTT 462357 Query 1320 GTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAGC 1379 |||||||| | || |||||||| ||| || | |||||||| ||||| || | || Sbjct 462356 GTTGGTAACATTGGCTGCTACAACCCAGCTAACTTAAACTTTCCTTTCAATGACTCCTGC 462297 Query 1380 AACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTT 1439 |||||| || |||||||| | || |||||||||||| | || ||| || ||||||||| Sbjct 462296 AACAAATACATAATATGGGTTGAGGAAGCAGGAAACGTAGGTCATCAGGTCAACCAATTT 462237 Query 1440 AAAGCAATCATGAGT-GGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAAC 1498 |||| |||||| ||| ||||| ||||||||||||| ||||| ||||| |||| | | Sbjct 462236 AAAGTGATCATGTCAAGGCAAAGCA-TTAGACTAGACCAGAAAGGAAAAGGCAGCAGATC 462178 Query 1499 CATCGAACCAACTCCAGTTATAATGAC 1525 || || ||||||||||| || ||||| Sbjct 462177 AATAGAGCCAACTCCAGTAATTATGAC 462151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14649145107030