Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq33 288 3e-74 seq132 241 4e-60 >seq33 Length=23381312 Score = 288 bits (318), Expect = 3e-74 Identities = 298/388 (77%), Gaps = 2/388 (1%) Strand=Plus/Minus Query 1326 ATGTGCTGTCTAAACAAACAGATGGGAAAAAGAAACACAATTCTACTTTGTGGTCCAGCA 1385 ||||||||||||| |||||| || |||| ||||||||||| || | || |||||| Sbjct 14639989 ATGTGCTGTCTAAGCAAACAACTGAGAAAGAGAAACACAATACTCTTACAAGGACCAGCA 14639930 Query 1386 AGTACAGGAAAAAGCTTACTAGCACAAAAAATAGCTCAGTTAGTTGGAAATGTAGGTTGC 1445 || ||||||||||| || |||||||||||||| | | || ||||| ||| | || ||| Sbjct 14639929 AGCACAGGAAAAAGTCTAATAGCACAAAAAATAAGTGAATTGGTTGGTAATATTGGATGC 14639870 Query 1446 TACAACGCTAGCA-ATGTAAACTTTCCATTCAATGATTGTAGCAACAAAAACCTAATATG 1504 || ||| | |||| | ||||||||||||| || |||| | |||||||| | || || Sbjct 14639869 TATAACCC-AGCAGACATAAACTTTCCATTTAACCATTGCTGTAACAAAAATATCATTTG 14639811 Query 1505 GATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTCAAAGCAATCATGAGTGG 1564 ||||||||| ||||||| | | ||| ||||| |||||||||||||| || ||| ||| Sbjct 14639810 GATAGAAGAGGCAGGAATCCTAGGACAGCAAGTCAACCAATTCAAAGCCATAATGCCTGG 14639751 Query 1565 TCAATCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGT 1624 ||| || ||||||||||||||||| |||||| |||| | |||||||||||||| || Sbjct 14639750 ACAAAGCATAAGACTAGACCAAAAAGGAAAAGGCTCCAAATCAATAGAACCAACTCCGGT 14639691 Query 1625 AATTATGACCACAAATGAAGACATTACTAAGGTCGTGGTAGGGTCAGAACTTAGACCTGA 1684 ||||||||| | ||||| ||||| || | ||| |||| | ||| |||||||| | Sbjct 14639690 AATTATGACAAGTAATGAGGACATCACAATTGTCAGAATAGGATGTGAAATTAGACCTAA 14639631 Query 1685 ACACAAACAACCAATCATGGACAGATGT 1712 |||| ||||||| | |||||||| Sbjct 14639630 ACACTCTGAACCAATTAAACACAGATGT 14639603 >seq132 Length=3867412 Score = 241 bits (266), Expect = 4e-60 Identities = 374/528 (71%), Gaps = 5/528 (1%) Strand=Plus/Minus Query 1294 ATATGAATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAA 1353 |||| ||||| | ||||| | ||||| || |||||| |||| |||||||| | |||| Sbjct 462489 ATAT-AATCCTATTAAAGTCTGCCATGCCATCATGTGCAGTCTCAACAAACAACTAGGAA 462431 Query 1354 AAAGAAACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAA 1413 | |||| ||| | ||||| || |||||| ||||||||||| | |||| |||| Sbjct 462430 AGAGAAGCACTACCCTACTACAGGGACCAGCAGACACAGGAAAAAGTCTCTTAGCTCAAA 462371 Query 1414 AAATAGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGC-AATGTAAACTTTCCA 1472 |||| | | || ||||| || | || ||||||||| | ||| || |||||||||| Sbjct 462370 AAATCTGTGAATTTGTTGGTAACATTGGCTGCTACAACCC-AGCTAACTTAAACTTTCCT 462312 Query 1473 TTCAATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACT 1532 |||||||| | |||||||| || |||||||| | || |||||||||||| | || | Sbjct 462311 TTCAATGACTCCTGCAACAAATACATAATATGGGTTGAGGAAGCAGGAAACGTAGGTCAT 462252 Query 1533 CAAGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGC 1592 || || |||||||| |||| |||||| | ||| || ||||||||||| ||||| Sbjct 462251 CAGGTCAACCAATTTAAAGTGATCATGTCAAGGCAAAGCATTAGACTAGACCAGAAAGGA 462192 Query 1593 AAAGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACT 1652 |||||||||| | | ||||| |||||||||||||||||||||| || | | || || Sbjct 462191 AAAGGCAGCAGATCAATAGAGCCAACTCCAGTAATTATGACCAGCAACAAGGGTATCACC 462132 Query 1653 AAGGTCGTGGTAGGGTCAGAACTTAGACCTGAACACAAACAACCAATCATGGACAGATGT 1712 | ||| | || | | | |||||||| |||| ||||| | | |||||||| Sbjct 462131 ACAGTCAGAATTGGTTGCAAGATCAGACCTGAGCACAGTGAACCACTGAAACACAGATGT 462072 Query 1713 ATACAAATACGCTTAACCACAAGACTTCCTGGAGACTTTGGTTTACTTAATAATGGAGAA 1772 | | || | | |||| || | ||| | |||| ||| | | ||| |||| Sbjct 462071 GTCAATATTAGACTCACCAAAACCTTAGATGGTAAGTTTGATTTGTTAGAAAATAAAGAA 462012 Query 1773 ATTCCAAGCATCTTCAGAAGACTAGAAAGAAA-AGGCTACAAACCAAC 1819 || |||| ||||||| || ||| ||||||| |||||| | | ||| Sbjct 462011 ATACCAAATATCTTCAAAACACT-CAAAGAAACTGGCTACCATCGAAC 461965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14716343020365