Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq33 293 7e-76 seq132 248 3e-62 >seq33 Length=23381312 Score = 293 bits (324), Expect = 7e-76 Identities = 381/525 (73%), Gaps = 4/525 (1%) Strand=Plus/Minus Query 1158 TCCATACAAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAA 1217 ||||||||||||| || || ||||||||||| | ||||||| || | || ||||| Sbjct 14640014 TCCATACAAAGTAACACACACAGCGATGTGCTGTCTAAGCAAACAACTGAGAAAGAGAAA 14639955 Query 1218 CACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATATG 1277 ||| || || | || || |||||||| || ||||| |||||||||||||||||| | Sbjct 14639954 CACAATACTCTTACAAGGACCAGCAAGCACAGGAAAAAGTCTAATAGCACAAAAAATAAG 14639895 Query 1278 CCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGA 1337 || ||||||||||| |||| ||||| || | || | |||||||||| || || | Sbjct 14639894 TGAATTGGTTGGTAATATTGGATGCTATAACCCAGCAGACATAAACTTTCCATTTAACCA 14639835 Query 1338 CTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAA 1397 ||| | ||||||||||| || ||| ||||||| || || | | | ||| ||||| || Sbjct 14639834 TTGCTGTAACAAAAATATCATTTGGATAGAAGAGGCAGGAATCCTAGGACAGCAAGTCAA 14639775 Query 1398 CCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAG 1457 |||||||||| | || ||| ||| ||| || ||||| |||||||||||||||||| Sbjct 14639774 CCAATTCAAAGCCATAATGCCTGGACAAAGCATAAGACTAGACCAAAAAGGAAAAGGCTC 14639715 Query 1458 TAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAAT 1517 ||| ||| |||||||||| || || ||||| | ||||| ||||| || | || | Sbjct 14639714 CAAATCAATAGAACCAACTCCGGTAATTATGACAAGTAATGAGGACATCACAATTGTCAG 14639655 Query 1518 GATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTGTAAGAAT 1577 |||||||||||| | | ||| ||||| |||| || | |||||||||| | || Sbjct 14639654 AATAGGATGTGAAATTAGACCTAAACACTCTGAACCAATTAAACACAGATGTGTTAACAT 14639595 Query 1578 AGAACTCaaaaaaaGACTACAAGGTGACTTTGGTTTGCTTGAAGATGGTGAAATCCCAGA 1637 |||||| |||| || | ||| |||||||| ||||| || ||||| ||| | Sbjct 14639594 TAAACTCACCAAAACTTTAGATGGTAGGTTTGGTTTAATTGAAAATAAAGAAATACCATA 14639535 Query 1638 CATATTCAAATGGTTAATTAAGAA--AGGATATGAACCAACAATG 1680 ||||| || ||| ||||| |||||| | ||||||||| Sbjct 14639534 GATATTTAAGACCTTA--GAAGAACTTGGATATCATCCAACAATG 14639492 >seq132 Length=3867412 Score = 248 bits (274), Expect = 3e-62 Identities = 347/484 (72%), Gaps = 2/484 (0%) Strand=Plus/Minus Query 1165 AAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATT 1224 ||||| | |||||| ||||||||| |||||||||||||| | || || |||| ||| | Sbjct 462476 AAAGTCTGCCATGCCATCATGTGCAGTCTCAACAAACAACTAGGAAAGAGAAGCACTACC 462417 Query 1225 CTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATATGCCAACTG 1284 ||||| || || ||| ||| || ||||| || |||| |||||||| || || | Sbjct 462416 CTACTACAGGGACCAGCAGACACAGGAAAAAGTCTCTTAGCTCAAAAAATCTGTGAATTT 462357 Query 1285 GTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAGC 1344 |||||||| |||| |||||||| | | || ||||||||||||||||||||| | || Sbjct 462356 GTTGGTAACATTGGCTGCTACAACCCAGCTAACTTAAACTTTCCTTTCAATGACTCCTGC 462297 Query 1345 AACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAATTC 1404 |||||| | ||||| ||||| || ||||| || ||| | || || || |||||||| Sbjct 462296 AACAAATACATAATATGGGTTGAGGAAGCAGGAAACGTAGGTCATCAGGTCAACCAATTT 462237 Query 1405 AAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAA 1464 ||| |||||| | ||| || ||||| ||||| |||||||||||||| | | | Sbjct 462236 AAAGTGATCATGTCAAGGCAAAGCATTAGACTAGACCAGAAAGGAAAAGGCAGCAGATCA 462177 Query 1465 ATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGGA 1524 || | ||||||||||| || ||||| | || | | || |||| ||| | || || Sbjct 462176 ATAGAGCCAACTCCAGTAATTATGACCAGCAACAAGGGTATCACCACAGTCAGAATTGGT 462117 Query 1525 TGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTGT-AAGAATAGAACT 1583 || | ||| ||| || |||| |||| | | |||||||||| || | ||| ||| Sbjct 462116 TGCAAGATCAGACCTGAGCACAGTGAACCACTGAAACACAGATGTGTCAATATTAG-ACT 462058 Query 1584 CaaaaaaaGACTACAAGGTGACTTTGGTTTGCTTGAAGATGGTGAAATCCCAGACATATT 1643 || |||| || | ||| | |||| |||| | ||| || ||||| ||| | || || Sbjct 462057 CACCAAAACCTTAGATGGTAAGTTTGATTTGTTAGAAAATAAAGAAATACCAAATATCTT 461998 Query 1644 CAAA 1647 |||| Sbjct 461997 CAAA 461994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15135530003550