Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq33 293 7e-76 seq132 253 6e-64 >seq33 Length=23381312 Score = 293 bits (324), Expect = 7e-76 Identities = 560/813 (69%), Gaps = 23/813 (3%) Strand=Plus/Minus Query 979 AAAGAACAAAGCATAAAAGAAACAAT-TGCACATCTCACA----GAAAATAAACTTCATA 1033 |||||||| | ||| | |||||| || ||||| || | | || ||||| | |||| Sbjct 14640283 AAAGAACAGAACATGACAGAAACTATATGCACTTCATATAATAAGAGAATAACATCCATA 14640224 Query 1034 CTCCTGAAAAATGGATGCTCGGTGATCCAGACTCATACATTCAACACATAGCAAATCCAG 1093 || |||||||| | | || ||||| ||||| |||| ||||||||||| Sbjct 14640223 -----GAGCAATGGATGATAGAAGACCCAGAGAGTTACATAAGTCACACAGCAAATCCAG 14640169 Query 1094 GTGGTGAGTCAGTTATAAAAGCAACTATGGACATTGTAACTCTCAAAATGGCAACAGAAA 1153 | || || | | |||||| ||| ||||| || || |||| |||| ||| | Sbjct 14640168 GAGGAGAAATACTCATAAAAACAATAATGGAAATGGTCTTACTCAGAATGAGTACATTTA 14640109 Query 1154 AAACAGCATACCAACTAATCATAGAACATGAAGGCCCACAACTAGACAAACCAAGAAAAT 1213 |||||||| ||||||||| ||| | | || | ||| | ||| || | ||| | Sbjct 14640108 TGACAGCATATGAACTAATCACAGAGAAAG--GGAAAAAAACAA-ACAGACTA-GAAGAA 14640053 Query 1214 GCAAAGCATGGAAACTAAT-CAAAAACAACA---AAATGAATCCATACAAAGTTTACCAT 1269 | |||| | || ||| | || || | | | || | |||||||||||| || Sbjct 14640052 ACTAAGCTTTTCAA--AATACTAAGACTAAATTCATAT-ATTCCATACAAAGTAACACAC 14639996 Query 1270 GCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATCCTACTATGTGGA 1329 || || || || || | ||||||||| | || |||||||||| || || ||| Sbjct 14639995 ACAGCGATGTGCTGTCTAAGCAAACAACTGAGAAAGAGAAACACAATACTCTTACAAGGA 14639936 Query 1330 CCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGAAATAGCAAAACTAGTTGGTAATGTT 1389 || ||||| ||||| ||||| ||| |||||||| ||||| || | ||||||||| || Sbjct 14639935 CCAGCAAGCACAGGAAAAAGTCTAATAGCACAAAAAATAAGTGAATTGGTTGGTAATATT 14639876 Query 1390 GGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGCAACAAAAACCTA 1449 ||||||||||| ||||| | |||||||||||| || | || | |||||||| | Sbjct 14639875 GGATGCTATAACCCAGCAGACATAAACTTTCCATTTAACCATTGCTGTAACAAAAATATC 14639816 Query 1450 ATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTTAAAGCAATTATG 1509 || ||| ||||||| || || | | | || ||||| |||||||| ||||| || ||| Sbjct 14639815 ATTTGGATAGAAGAGGCAGGAATCCTAGGACAGCAAGTCAACCAATTCAAAGCCATAATG 14639756 Query 1510 AGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACT 1569 ||| || || ||||||||||||||||| |||||| ||||||||| ||||||||| Sbjct 14639755 CCTGGACAAAGCATAAGACTAGACCAAAAAGGAAAAGGCTCCAAATCAATAGAACCAACT 14639696 Query 1570 CCAGTCATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTTCTGAACTAAAA 1629 || || |||||||| | |||||| || ||||||| |||| | || | |||| | | | Sbjct 14639695 CCGGTAATTATGACAAGTAATGAGGACATCACAATTGTCAGAATAGGATGTGAAATTAGA 14639636 Query 1630 CCAGAACACAAACAACCTATCATGGACAGATGTGTCAGAATCTATCTAAACAATAGACTA 1689 || ||||| |||| || | |||||||||| | || | || | ||| | || Sbjct 14639635 CCTAAACACTCTGAACCAATTAAACACAGATGTGTTAACATTAAACTCACCAAAACTTTA 14639576 Query 1690 AATGGTGACTTTGGTTTGCTTGAACACAATGAAATTCCAAGCATATTCAAACACTTGATC 1749 ||||| |||||||| ||||| | || ||||| ||| ||||| || || | | Sbjct 14639575 GATGGTAGGTTTGGTTTAATTGAAAATAAAGAAATACCATAGATATT-TAAGACCTTAGA 14639517 Query 1750 AGTA-AAGGATTTGAACCAACAATGGCCAGCTA 1781 || | |||| | | ||||||||| |||||| Sbjct 14639516 AGAACTTGGATATCATCCAACAATGAGCAGCTA 14639484 Score = 93.3 bits (102), Expect = 1e-15 Identities = 204/300 (68%), Gaps = 12/300 (4%) Strand=Plus/Minus Query 2493 CTCTACCATATAGGTTGGACTCTACCTGGATACAACTATCTAGGACCGGGTAACAACAAC 2552 |||| || | ||| | ||| |||| || ||||| || || ||||| || |||| || Sbjct 14639101 CTCTGCCTCACAGGCTATACTTTACCAGGCTACAAATACCTTGGACCAGGCAACAC--AC 14639044 Query 2553 TTTAAGAA-GA-AACCTACAAATCCATCTGACAAAGCCGCACGCAAACACGATTTAGAAT 2610 || | || || |||| | || ||| ||| ||||| || | | ||||| | | | Sbjct 14639043 TTGACCAAAGAGAACCAGCTAACCCAAGTGATAAAGCTGCCAGACAGCACGACGAACATT 14638984 Query 2611 ACAGCAAACTTATCCAACAA---GGACACAATCCATACATCTACTTCAACCAAGCCGACG 2667 || | ||||| |||||| || | || || ||| ||| ||||||| | || ||| Sbjct 14638983 ACC---ATCTTATTCAACAATTAGGTAATAACCCTTACTTCTTCTTCAACGAGGCTGACT 14638927 Query 2668 ACGACTTCATCAAAAACACTGACCAAGCACCAGACTGGGGTGGTAAGTTCGGTAACTTTG 2727 ||||| ||||||||||| || | || || |||||||||| | |||| || | Sbjct 14638926 CTGACTTTATCAAAAACACAGAAAATGCCCCTAACTGGGGTGGCTGGATCGGCAATAATA 14638867 Query 2728 CCTTCAGACTAAAAAAGGCAATAGCACCTGAACTGGCACCTCCAGCaaaaaaaccaaaaa 2787 ||||| | | || | ||| |||||||||||| ||||||| |||| ||| ||||| Sbjct 14638866 TCTTCAAAATTAAGAGACTCATAACACCTGAACTGGGACCTCCAACAAAGAAA--AAAAA 14638809 >seq132 Length=3867412 Score = 253 bits (280), Expect = 6e-64 Identities = 352/489 (72%), Gaps = 3/489 (1%) Strand=Plus/Minus Query 1258 AAAGTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATC 1317 ||||| | |||||| || | || | || |||||||||||||| || ||| ||| | | Sbjct 462476 AAAGTCTGCCATGCCATCATGTGCAGTCTCAACAAACAACTAGGAAAGAGAAGCACTACC 462417 Query 1318 CTACTATGTGGACCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGAAATAGCAAAACTA 1377 |||||| ||||| ||| ||||| ||||| || |||| ||| |||| || | Sbjct 462416 CTACTACAGGGACCAGCAGACACAGGAAAAAGTCTCTTAGCTCAAAAAATCTGTGAATTT 462357 Query 1378 GTTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGC 1437 |||||||| |||| ||||| || |||| || ||||||||| |||||||||| || Sbjct 462356 GTTGGTAACATTGGCTGCTACAACCCAGCTAACTTAAACTTTCCTTTCAATGACTCCTGC 462297 Query 1438 AACAAAAACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTT 1497 |||||| || |||| ||||| || ||||| || ||| | ||| || || ||||||||| Sbjct 462296 AACAAATACATAATATGGGTTGAGGAAGCAGGAAACGTAGGTCATCAGGTCAACCAATTT 462237 Query 1498 AAAGCAATTATGAGT-GGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATC 1556 |||| || ||| ||| | ||| | ||||||||||| ||||| |||||||||| ||| Sbjct 462236 AAAGTGATCATGTCAAGGCAAAGCATT-AGACTAGACCAGAAAGGAAAAGGCAGCAGATC 462178 Query 1557 AATTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGG 1616 ||| || ||||||||||| |||||||| | || | | |||||| | ||||| |||| Sbjct 462177 AATAGAGCCAACTCCAGTAATTATGACCAGCAACAAGGGTATCACCACAGTCAGAATTGG 462118 Query 1617 TTCTGAACTAAAACCAGAACACAAACAACCTATCATGGACAGATGTGTCAGAATCTATCT 1676 || | | | ||| || |||| |||| | | |||||||||||| || || Sbjct 462117 TTGCAAGATCAGACCTGAGCACAGTGAACCACTGAAACACAGATGTGTCAATATTAGACT 462058 Query 1677 AAACAATAGACTAAATGGTGACTTTGGTTTGCTTGAACACAATGAAATTCCAAGCATATT 1736 | ||| | || ||||| | |||| |||| | ||| | || ||||| |||| || || Sbjct 462057 CACCAAAACCTTAGATGGTAAGTTTGATTTGTTAGAAAATAAAGAAATACCAAATATCTT 461998 Query 1737 C-AAACACT 1744 | ||||||| Sbjct 461997 CAAAACACT 461989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14732342523540