Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq1308 82.4 2e-12 >seq1308 Length=442142 Score = 82.4 bits (90), Expect = 2e-12 Identities = 121/169 (72%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 1521 AGAAACGCCATATGGCT-----CTACGGACCTGCCACCACCGGGAAGACCAACATTGCAG 1575 |||||| ||| |||| | ||| |||||||||| | | | ||| |||||||||| Sbjct 52682 AGAAACACCACATGGTTGAACCCTATGGACCTGCCAAGATCAGCAAGGCCAACATTGCCA 52623 Query 1576 AAGCTATTGCCCATGCTGTACCCT-TCTATGGCTGTGTTAACTGGACTAATGAGAACTTT 1634 | |||||||||||||||| | | ||| |||| ||| || ||| | | | |||||||| Sbjct 52622 AGGCTATTGCCCATGCTG--CTGTGTCTGTGGCCATGTCAAGTGGGCCATTAAGAACTTT 52565 Query 1635 CCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAA 1683 || || ||| |||| || | || || |||||| ||| |||||| Sbjct 52564 CCCTTCAATAATTGAGTGAAGAAGATAACTATTTGGCAGGAAAAGGGAA 52516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16207827157280