Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq1308 80.6 8e-12 >seq1308 Length=442142 Score = 80.6 bits (88), Expect = 8e-12 Identities = 150/217 (69%), Gaps = 9/217 (4%) Strand=Plus/Minus Query 1299 AAAGGTTCGGGAAGC-GCAACACCATCTGGCTG-----TTTGGGCCGGCCACCACGGGCA 1352 || ||||| ||||| | ||||||| ||| || | ||| || |||| | ||| Sbjct 52697 AAGGGTTCTGGAAGGAGAAACACCACATGGTTGAACCCTATGGACCTGCCAAGATCAGCA 52638 Query 1353 AGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCT-TCTACGGCTGCGTCAACTGG 1411 || ||||||| || | || || ||||| || ||| | ||| ||| ||||| ||| Sbjct 52637 AGGCCAACATTGCCAAGGCTATTGCCCATGC--TGCTGTGTCTGTGGCCATGTCAAGTGG 52580 Query 1412 ACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAG 1471 ||| | ||||||||||||||||| |||| || | ||||| || ||| ||| || Sbjct 52579 GCCATTAAGAACTTTCCCTTCAATAATTGAGTGAAGAAGATAACTATTTGGCAGGAAAAG 52520 Query 1472 GGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGG 1508 || | ||| || || |||| ||||||| |||||| Sbjct 52519 GGAAGGATTACATCCCAGGTGGTGGAGTTGCCCAAGG 52483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14967709441440