Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq1308 78.8 3e-11 >seq1308 Length=442142 Score = 78.8 bits (86), Expect = 3e-11 Identities = 134/192 (70%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 1243 GGACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGT-T 1301 |||| ||| | | | ||||| ||||||| || |||||||||||||||| ||| || | Sbjct 52656 GGACCTGCCAAGATCAGCAAGGCCAACATTGCCAAGGCTATTGCCCATGC--TGCTGTGT 52599 Query 1302 CTATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAAT 1361 || ||| || || ||| ||| |||||||||| ||||| | || || | || || Sbjct 52598 CTGTGGCCATGTCAAGTGGGCCATTAAGAACTTTCCCTTCAATAATTGAGTGAAGAAGAT 52539 Query 1362 GATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGAT 1421 | ||| ||| ||| |||| | || || || | |||||||| |||||| || Sbjct 52538 AACTATTTGGCAGGAAAAGGGAAGGATTACATCCCAGGTGGTGGAGTTGCCCAAGGTTAT 52479 Query 1422 TCTGGGAGGATC 1433 ||||||| ||| Sbjct 52478 CCTGGGAGAATC 52467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14891001129120