Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq364 87.8 5e-14 seq1308 80.6 8e-12 >seq364 Length=1569077 Score = 87.8 bits (96), Expect = 5e-14 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 2991 CCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACT 3050 |||| ||||||||||||| |||| ||| | ||||||| || | |||| || || Sbjct 496069 CCTATTTTGGATACAGCATCCCCAGGGCTAATGTTGACTTCAATCACTTCTACTGCTCTC 496010 Query 3051 GGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCC 3110 |||||||| ||||| | | | |||||| |||| ||||| |||||| ||| | Sbjct 496009 GGAGCCCCTGAGACCAGTAGTGGCTCATCTGTAACTTTTGGGGATTCAGATCCCAAAATC 495950 Query 3111 TCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTC 3148 ||| |||| ||||||||| ||||||| || |||||| Sbjct 495949 TCAAAGTC-GGATCTTCAACGTTCAAGTAAAGGAGGTC 495913 >seq1308 Length=442142 Score = 80.6 bits (88), Expect = 8e-12 Identities = 139/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 1342 CTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCC 1401 ||| ||||| |||| || | ||||| ||||||| || |||| || ||||| ||| | Sbjct 52660 CTATGGACCTGCCAAGATCAGCAAGGCCAACATTGCCAAGGCTATTGCCCATGCTG--CT 52603 Query 1402 CTTT-TACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACA 1460 | | | ||| || || ||| ||| | | ||||||||||| ||| | || ||| | | Sbjct 52602 GTGTCTGTGGCCATGTCAAGTGGGCCATTAAGAACTTTCCCTTCAATAATTGAGTGAAGA 52543 Query 1461 AAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGG 1520 | || |||||| ||| |||||| ||| || | ||||||| || | |||||| Sbjct 52542 AGATAACTATTTGGCAGGAAAAGGGAAGGATTACATCCCAGGTGGTGGAGTTGCCCAAGG 52483 Query 1521 CCATCCTGGGGGGCTCAAAG 1540 |||||||| | |||||| Sbjct 52482 TTATCCTGGGAGAATCAAAG 52463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14724799785760