Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq1308 82.4 2e-12 >seq1308 Length=442142 Score = 82.4 bits (90), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 1302 GTTCGGGAAGC-GCAACACCATCTGGCTG-----TTTGGGCCCGCCACCACCGGCAAGAC 1355 |||| ||||| | ||||||| ||| || | ||| || |||| | | ||||| | Sbjct 52693 GTTCTGGAAGGAGAAACACCACATGGTTGAACCCTATGGACCTGCCAAGATCAGCAAGGC 52634 Query 1356 CAACATTGCGGAAGCCATCGCCCACGCCGTGCCCT-TCTACGGCTGCGTCAACTGGACCA 1414 ||||||||| | || || ||||| || ||| | ||| ||| ||||| ||| ||| Sbjct 52633 CAACATTGCCAAGGCTATTGCCCATGC--TGCTGTGTCTGTGGCCATGTCAAGTGGGCCA 52576 Query 1415 ATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCA 1474 | |||||||||||||||| |||| || | ||||| || ||| ||| |||| | Sbjct 52575 TTAAGAACTTTCCCTTCAATAATTGAGTGAAGAAGATAACTATTTGGCAGGAAAAGGGAA 52516 Query 1475 AGATGACGGCCAAGGTCGTGGAGTCCGCCAAGG 1507 ||| || || |||| ||||||| |||||| Sbjct 52515 GGATTACATCCCAGGTGGTGGAGTTGCCCAAGG 52483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14977297980480