Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq1308 87.8 5e-14 >seq1308 Length=442142 Score = 87.8 bits (96), Expect = 5e-14 Identities = 127/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 1231 TGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCT- 1289 |||||| |||| | | ||||| |||||||||| | || || ||||| || ||| | Sbjct 52657 TGGACCTGCCAAGATCAGCAAGGCCAACATTGCCAAGGCTATTGCCCATGC--TGCTGTG 52600 Query 1290 TCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGA 1349 ||| ||| ||||| ||| ||| | ||||||||||||||||| |||| || | |||| Sbjct 52599 TCTGTGGCCATGTCAAGTGGGCCATTAAGAACTTTCCCTTCAATAATTGAGTGAAGAAGA 52540 Query 1350 TGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGG 1406 | || ||| ||| |||| | ||| || || |||| ||||||| |||||| Sbjct 52539 TAACTATTTGGCAGGAAAAGGGAAGGATTACATCCCAGGTGGTGGAGTTGCCCAAGG 52483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13928951045440