Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq57663 156 2e-34 seq20054 93.3 2e-15 >seq57663 Length=1407 Score = 156 bits (172), Expect = 2e-34 Identities = 115/134 (86%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 || |||||| ||| | |||||||| ||||||| ||||||| ||||| ||||| | || Sbjct 136 ACTCGCCCTATAGAGTGTCATTAAGCACGGCGGGAGTGGTGGCTACGCTCAGCGCGTCCC 77 Query 5548 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5607 |||| |||| | ||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 76 CTACGCTTGGCCGCGCCCTAGCGCCCGCTCCTTTCACTTTCTTCCCTTCCTTACTCGCCA 17 Query 5608 CGTTCGCCGGCTTT 5621 |||| ||||||||| Sbjct 16 CGTTAGCCGGCTTT 3 >seq20054 Length=386 Score = 93.3 bits (102), Expect = 2e-15 Identities = 92/115 (80%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 5513 CGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACT-TGCCAGCGCCCTAGCGC 5571 |||||||| |||||| ||||| || ||||||||||| ||||| |||||| || Sbjct 113 CGCGGCGGTGCTGGTGGATACGCACAT-GTGACCGCTACGTGATGCCACTGCCCTAA-GC 56 Query 5572 CCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCG 5626 || | |||||| |||||||||||||||||| | | |||| |||||||||||||| Sbjct 55 CCACACCTTTCTGTTTCTTCCCTTCCTTTCTAGGCTCGTTGGCCGGCTTTCCCCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20372247594292