Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003287.2
Length=6407
Score E
Sequences producing significant alignments: (Bits) Value
seq57663 156 2e-34
seq20054 93.3 2e-15
>seq57663
Length=1407
Score = 156 bits (172), Expect = 2e-34
Identities = 115/134 (86%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547
|| |||||| ||| | |||||||| ||||||| ||||||| ||||| ||||| | ||
Sbjct 136 ACTCGCCCTATAGAGTGTCATTAAGCACGGCGGGAGTGGTGGCTACGCTCAGCGCGTCCC 77
Query 5548 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5607
|||| |||| | ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 76 CTACGCTTGGCCGCGCCCTAGCGCCCGCTCCTTTCACTTTCTTCCCTTCCTTACTCGCCA 17
Query 5608 CGTTCGCCGGCTTT 5621
|||| |||||||||
Sbjct 16 CGTTAGCCGGCTTT 3
>seq20054
Length=386
Score = 93.3 bits (102), Expect = 2e-15
Identities = 92/115 (80%), Gaps = 3/115 (3%)
Strand=Plus/Minus
Query 5513 CGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACT-TGCCAGCGCCCTAGCGC 5571
|||||||| |||||| ||||| || ||||||||||| ||||| |||||| ||
Sbjct 113 CGCGGCGGTGCTGGTGGATACGCACAT-GTGACCGCTACGTGATGCCACTGCCCTAA-GC 56
Query 5572 CCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCG 5626
|| | |||||| |||||||||||||||||| | | |||| ||||||||||||||
Sbjct 55 CCACACCTTTCTGTTTCTTCCCTTCCTTTCTAGGCTCGTTGGCCGGCTTTCCCCG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 20372247594292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |