Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq57663 152 2e-33 seq20054 89.7 2e-14 >seq57663 Length=1407 Score = 152 bits (168), Expect = 2e-33 Identities = 114/134 (85%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 || |||||| ||| | |||||||| ||||||| ||||||| ||||| ||||| | || Sbjct 136 ACTCGCCCTATAGAGTGTCATTAAGCACGGCGGGAGTGGTGGCTACGCTCAGCGCGTCCC 77 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608 |||| |||| | ||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 76 CTACGCTTGGCCGCGCCCTAGCGCCCGCTCCTTTCACTTTCTTCCCTTCCTTACTCGCCA 17 Query 5609 CGTTCTCCGGCTTT 5622 |||| |||||||| Sbjct 16 CGTTAGCCGGCTTT 3 >seq20054 Length=386 Score = 89.7 bits (98), Expect = 2e-14 Identities = 91/115 (79%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 5514 CGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACT-TGCCAGCGCCCTAGCGC 5572 |||||||| |||||| ||||| || ||||||||||| ||||| |||||| || Sbjct 113 CGCGGCGGTGCTGGTGGATACGCACAT-GTGACCGCTACGTGATGCCACTGCCCTAA-GC 56 Query 5573 CCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCTCCGGCTTTCCCCG 5627 || | |||||| |||||||||||||||||| | | |||| ||||||||||||| Sbjct 55 CCACACCTTTCTGTTTCTTCCCTTCCTTTCTAGGCTCGTTGGCCGGCTTTCCCCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20375445247344