Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_025824.1
Length=6408
Score E
Sequences producing significant alignments: (Bits) Value
seq57663 152 2e-33
seq20054 89.7 2e-14
>seq57663
Length=1407
Score = 152 bits (168), Expect = 2e-33
Identities = 114/134 (85%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548
|| |||||| ||| | |||||||| ||||||| ||||||| ||||| ||||| | ||
Sbjct 136 ACTCGCCCTATAGAGTGTCATTAAGCACGGCGGGAGTGGTGGCTACGCTCAGCGCGTCCC 77
Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608
|||| |||| | ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 76 CTACGCTTGGCCGCGCCCTAGCGCCCGCTCCTTTCACTTTCTTCCCTTCCTTACTCGCCA 17
Query 5609 CGTTCTCCGGCTTT 5622
|||| ||||||||
Sbjct 16 CGTTAGCCGGCTTT 3
>seq20054
Length=386
Score = 89.7 bits (98), Expect = 2e-14
Identities = 91/115 (79%), Gaps = 3/115 (3%)
Strand=Plus/Minus
Query 5514 CGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACT-TGCCAGCGCCCTAGCGC 5572
|||||||| |||||| ||||| || ||||||||||| ||||| |||||| ||
Sbjct 113 CGCGGCGGTGCTGGTGGATACGCACAT-GTGACCGCTACGTGATGCCACTGCCCTAA-GC 56
Query 5573 CCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCTCCGGCTTTCCCCG 5627
|| | |||||| |||||||||||||||||| | | |||| |||||||||||||
Sbjct 55 CCACACCTTTCTGTTTCTTCCCTTCCTTTCTAGGCTCGTTGGCCGGCTTTCCCCG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 20375445247344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |