Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq107152 82.4 2e-12 >seq107152 Length=6463 Score = 82.4 bits (90), Expect = 2e-12 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 1220 ATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCAC 1279 ||| | || | || ||| |||| ||| ||||||||||||||| |||| || |||||| Sbjct 5119 ATCGGACTTTATGAACCTGCCAATACCCACAAGACCAACATTGCCAAAGCTATTGCCCAC 5178 Query 1280 GCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGC 1339 | ||| ||| || ||||||||| ||| || | |||||||| ||| ||| Sbjct 5179 ATTG-ACCCCTCTGTAGCCATGTCAACTGGGCCATCAAGGATTTTCCCTTAAATAGTTGA 5237 Query 1340 GTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCC 1399 || ||||||||| || || || || || || || || || |||| ||||||| Sbjct 5238 GTGGACAAGATGACTATTTGACAAGAAGAAGGAAAAATTACATCCCAGGTGGTGGAGTTG 5297 Query 1400 GCCAAGGCCATTCTCGG 1416 |||| ||||| || || Sbjct 5298 TCCAAAGCCATCCTGGG 5314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13892144336200