Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq71756 233 6e-58 >seq71756 Length=1205245 Score = 233 bits (258), Expect = 6e-58 Identities = 303/418 (72%), Gaps = 7/418 (2%) Strand=Plus/Plus Query 1316 GTTTGGGCCTGCAACTACCGGGAAGACCAACATCGCGGAGGCCATAGCCCACACTGTGCC 1375 |||||| || | || || | ||||||| ||| | |||||||| | ||| | |||| Sbjct 231770 GTTTGGCCCCGTGACCACAGTAAAGACCAGCATGACAGAGGCCATTGTCCATGCCATGCC 231829 Query 1376 CTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAA 1435 || || || | | | |||||| ||||||||||||||||||||| ||||| ||| ||| Sbjct 231830 CTCCTTTGGCTACCTTAACTGGGCCAATGAGAACTTTCCCTTCAGTGACTGAATCGGCAA 231889 Query 1436 GATGGTGATCTGGTGGGAGGAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGC 1495 | || | |||||||||||||||||||||||||| |||| | ||||| | |||| || Sbjct 231890 GGTGATTATCTGGTGGGAGGAGGGGAAGATGACTTTCAAGATGGTGGAAACTACCAAGGC 231949 Query 1496 CATTCTCGGAGGAAGCAAGGTGCGCGTGGACCAGAAATGCAAGTCCTCGGCCCAGATAGA 1555 | |||||| || |||||| | || |||| |||||| |||| || || || || | || Sbjct 231950 CGCTCTCGGGGGCAGCAAGATCCGTGTGGGTCAGAAAGGCAAATCTTCCACCGAGCTGGA 232009 Query 1556 CCCGACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACTC 1615 || ||||||| | ||| | ||| || || |||||||| || | |||| |||| | Sbjct 232010 CCAGACTCCCATCATCCTGACCAGCAGCAAGGACATGTGCACCACGGTTGAGGGGACCCG 232069 Query 1616 AACGACCTTCGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAATTTGAACTCA---- 1671 || | ||| || || ||||| | | ||||||| |||||||||||| | || | Sbjct 232070 TACCATCTTGGACCATAAGCAGACCCTCCAAGACC-AATGTTCAAATTTTAGCTAAGACG 232128 Query 1672 --CCCGCCGTCTGGATCATGACTTTGGGAAGGTCACCAAGCAGGAAGTCAAAGACTTT 1727 | || |||||| | |||||||| || |||| || ||||| |||||||||||| Sbjct 232129 TTCTCGTTGTCTGGGACTGGACTTTGGCAAAATCACGAAACAGGAGGTCAAAGACTTT 232186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14848653385800