Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq71756 217 4e-53 >seq71756 Length=1205245 Score = 217 bits (240), Expect = 4e-53 Identities = 302/420 (72%), Gaps = 10/420 (2%) Strand=Plus/Plus Query 1333 GTAAA-ACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAAC 1391 ||||| |||| ||| | || ||||| | ||| ||| |||||| || |||| | | ||| Sbjct 231789 GTAAAGACCAGCATGACAGAGGCCATTGTCCATGCCATGCCCTCCTTTGGCTACCTTAAC 231848 Query 1392 TGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAG 1451 ||| ||||||||||||||||||||| || || ||| |||| || | |||||||||||| Sbjct 231849 TGGGCCAATGAGAACTTTCCCTTCAGTGACTGAATCGGCAAGGTGATTATCTGGTGGGAG 231908 Query 1452 GAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAG 1511 ||||| |||||||| |||| | ||||| | |||||||| ||| || || |||||| Sbjct 231909 GAGGGGAAGATGACTTTCAAGATGGTGGAAACTACCAAGGCCGCTCTCGGGGGCAGCAAG 231968 Query 1512 GTGCGCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTC 1571 | || |||| || || |||| || || || || | || | |||||| | ||| | Sbjct 231969 ATCCGTGTGGGTCAGAAAGGCAAATCTTCCACCGAGCTGGACCAGACTCCCATCATCCTG 232028 Query 1572 ACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAG 1631 ||| || || |||||||| || | |||| |||| | | |||| ||| || ||| || Sbjct 232029 ACCAGCAGCAAGGACATGTGCACCACGGTTGAGGGGACCCGTACCATCTTGGACCATAAG 232088 Query 1632 CAGCCGCTGCAGGACCGGATGTTTGAATTTGA------ACTTACCCGCCGTTTGGACCAT 1685 ||| | || || |||| ||||| ||||| | || | | || || ||| | Sbjct 232089 CAGACCCTCCAAGACC-AATGTTCAAATTTTAGCTAAGACGTTCTCGTTGTCTGGGACTG 232147 Query 1686 GACTTTGGGAAGGTCACCAAACAGGAAGTAAAGGACTTTTTCCGGTGGGCTTCCGATCAC 1745 |||||||| || |||| |||||||| || || ||| |||| | |||||||| |||||| Sbjct 232148 GACTTTGGCAAAATCACGAAACAGGAGGTCAAAGAC--TTTCTGATGGGCTTCTGATCAC 232205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14998930454950