Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq71756 176 1e-40 >seq71756 Length=1205245 Score = 176 bits (194), Expect = 1e-40 Identities = 293/420 (70%), Gaps = 10/420 (2%) Strand=Plus/Plus Query 1387 GTAAA-ACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAAC 1445 ||||| |||| ||| | || ||||| | ||| ||| |||||| || |||| | | ||| Sbjct 231789 GTAAAGACCAGCATGACAGAGGCCATTGTCCATGCCATGCCCTCCTTTGGCTACCTTAAC 231848 Query 1446 TGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAG 1505 ||| |||||||||||||||| |||| || || ||| |||| || | |||||||||||| Sbjct 231849 TGGGCCAATGAGAACTTTCCCTTCAGTGACTGAATCGGCAAGGTGATTATCTGGTGGGAG 231908 Query 1506 GAGGGCAAGATGACGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAG 1565 ||||| |||||||| |||| | || || | |||||||| || || || |||||| Sbjct 231909 GAGGGGAAGATGACTTTCAAGATGGTGGAAACTACCAAGGCCGCTCTCGGGGGCAGCAAG 231968 Query 1566 GTGCGCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTC 1625 | || |||| || || |||| || || || || | |||| |||||| | ||| | Sbjct 231969 ATCCGTGTGGGTCAGAAAGGCAAATCTTCCACCGAGCTGGACCAGACTCCCATCATCCTG 232028 Query 1626 ACCTCCAACACCAACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAA 1685 ||| || || |||||||| | | || || | | |||| ||| || || | Sbjct 232029 ACCAGCAGCAAGGACATGTGCACCACGGTTGAGGGGACCCGTACCATCTTGGACCATAAG 232088 Query 1686 CAACCACTCCAGGACCGGATGTTCAAGTTCGAGCTCA------CCAAGCGCCTGGAGCAC 1739 || | ||||| |||| |||||||| || |||| | | | |||| | Sbjct 232089 CAGACCCTCCAAGACC-AATGTTCAAATTTTAGCTAAGACGTTCTCGTTGTCTGGGACTG 232147 Query 1740 GACTTTGGCAAGGTCACCAAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCGTCAGATCAC 1799 ||||||||||| |||| || ||||| ||||||||| |||| | ||||| || |||||| Sbjct 232148 GACTTTGGCAAAATCACGAAACAGGAGGTCAAAGAC--TTTCTGATGGGCTTCTGATCAC 232205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15130023217400