Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq71756 237 5e-59 >seq71756 Length=1205245 Score = 237 bits (262), Expect = 5e-59 Identities = 311/429 (72%), Gaps = 9/429 (2%) Strand=Plus/Plus Query 1330 GTTTGGGCCGGCCACCACGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCC 1389 |||||| || | ||||| | ||||||| ||| | || ||||| | ||| ||| |||| Sbjct 231770 GTTTGGCCCCGTGACCACAGTAAAGACCAGCATGACAGAGGCCATTGTCCATGCCATGCC 231829 Query 1390 CTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAA 1449 || || |||| | | |||||| ||||||||||||||||||||| ||| || ||| ||| Sbjct 231830 CTCCTTTGGCTACCTTAACTGGGCCAATGAGAACTTTCCCTTCAGTGACTGAATCGGCAA 231889 Query 1450 GATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGC 1509 | || | ||||||||||||||||| |||||||| |||| | ||||| | ||||||| Sbjct 231890 GGTGATTATCTGGTGGGAGGAGGGGAAGATGACTTTCAAGATGGTGGAAACTACCAAGGC 231949 Query 1510 CATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGA 1569 | |||||| ||||||||| | || |||| || || |||| || ||| || || | || Sbjct 231950 CGCTCTCGGGGGCAGCAAGATCCGTGTGGGTCAGAAAGGCAAATCTTCCACCGAGCTGGA 232009 Query 1570 CCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAG 1629 || || ||| | ||| | ||| || || |||||||| || | |||| |||| | | Sbjct 232010 CCAGACTCCCATCATCCTGACCAGCAGCAAGGACATGTGCACCACGGTTGAGGGGACCCG 232069 Query 1630 CACCACCTTCGAGCACCAGCAGCCGTTGCAGGACCGGATGTTCAAATTTGAACTCA---- 1685 |||| ||| || || ||||| | | || |||| |||||||||||| | || | Sbjct 232070 TACCATCTTGGACCATAAGCAGACCCTCCAAGACC-AATGTTCAAATTTTAGCTAAGACG 232128 Query 1686 --CCCGCCGTCTGGAGCATGACTTTGGCAAGGTGACAAAGCAGGAAGTCAAAGAGTTCTT 1743 | || |||||| | ||||||||||| | || || ||||| |||||||| | || Sbjct 232129 TTCTCGTTGTCTGGGACTGGACTTTGGCAAAATCACGAAACAGGAGGTCAAAGACT--TT 232186 Query 1744 CCGCTGGGC 1752 | | ||||| Sbjct 232187 CTGATGGGC 232195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14973351379350