Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq71756 136 1e-28 >seq71756 Length=1205245 Score = 136 bits (150), Expect = 1e-28 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 1251 GACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATG 1310 |||||| | ||||||| ||| | ||||| |||| |||||| |||| | || ||| | Sbjct 231782 GACCACAGTAAAGACCAGCATGACAGAGGCCATTGTCCATGCCATGCCCTCCTTTGGCTA 231841 Query 1311 CGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTG 1370 | |||||||| |||| ||||||||||| |||| ||||| ||| || |||||||||| Sbjct 231842 CCTTAACTGGGCCAATGAGAACTTTCCCTTCAGTGACTGAATCGGCAAGGTGATTATCTG 231901 Query 1371 GTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGC 1418 |||||||||||| || ||||| ||| |||||||||| ||||||| Sbjct 231902 GTGGGAGGAGGGGAAGATGACTTTCAAGATGGTGGAAACTACCAAGGC 231949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14896614152550