Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq71756 129 2e-26 seq71345 91.5 4e-15 seq70781 78.8 3e-11 >seq71756 Length=1205245 Score = 129 bits (142), Expect = 2e-26 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 1346 GGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTT 1405 || |||| || || | ||||||| ||| | |||||||| | ||| | |||||| Sbjct 231774 GGCCCCGTGACCACAGTAAAGACCAGCATGACAGAGGCCATTGTCCATGCCATGCCCTCC 231833 Query 1406 TACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATG 1465 | |||| | | |||||| ||||||| ||||||||||| | |||||| | | ||| || Sbjct 231834 TTTGGCTACCTTAACTGGGCCAATGAGAACTTTCCCTTCAGTGACTGAATCGGCAAGGTG 231893 Query 1466 CTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATC 1525 | || |||||||||||||| |||||||| |||| |||| ||| | |||||||| Sbjct 231894 ATTATCTGGTGGGAGGAGGGGAAGATGACTTTCAAGATGGTGGAAACTACCAAGGCCGCT 231953 Query 1526 CTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAATGTAAATCCTC 1569 || |||||| ||| | || || | ||||||| | ||||| || Sbjct 231954 CTCGGGGGCAGCAAGATCCGTGTGGGTCAGAAAGGCAAATCTTC 231997 >seq71345 Length=12063256 Score = 91.5 bits (100), Expect = 4e-15 Identities = 157/227 (69%), Gaps = 18/227 (8%) Strand=Plus/Plus Query 2977 AAGCAACGCCAACGCCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCG 3036 ||| || | ||| ||||||| ||| | || ||| |||||| | ||||||||||||||| | Sbjct 11529801 AAGGAATGTCAATGCCTACTCTGGGTGCAACACTCCCTGGAGATACTTTGACTTTAACGG 11529860 Query 3037 CTTCCACAGCCACTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTT 3096 |||||||| || |||||| ||||| ||||| |||| | ||||| | || Sbjct 11529861 ATTCCACAGACA-----------GAGACTAGCAAATACTCACCAACTATCACTGGAGATT 11529909 Query 3097 CAGACCC---CGGTCCCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGGT 3153 | | ||| || |||| || |||||| | || ||||| ||||| || ||| | Sbjct 11529910 CTGCCCCAAAAAGT--CTCA-AGGGAAAATCCTTAATATTCATGTCAACAAGATCATAAT 11529966 Query 3154 GCAGGACTCCACCACNNNNATCGCCAACAACCTCACCTCCACCGTCC 3200 ||||||| || ||| | ||| | |||||||| | || |||| Sbjct 11529967 GCAGGACAGCATCACAACACT-GCCGATAACCTCACATTGACGGTCC 11530012 Score = 77.0 bits (84), Expect = 1e-10 Identities = 172/258 (67%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 4057 CTTTCACCCCTCTCCGGCCATGGGCGGATTCGGACTCAAACACCCACCGCCCATGATGCT 4116 |||||| || ||| |||||||||||| |||||||| ||||| | |||| | | Sbjct 11530893 CTTTCATCCAAGTCCTTACATGGGCGGATTTAGACTCAAAAGACCACCTCACATGTTAGT 11530952 Query 4117 CATCAAGAACACGCCTGTGCCCGGAAATATCACCAGCTTCTCGGACGTGCCCGTCAGCAG 4176 | ||||||||| || || |||| ||||||| ||| || | | | ||||| Sbjct 11530953 GAATCAGAACACGCAGGTTCCTAGAAACATCACCACATTCACGCAACAGACTGTCAGTTC 11531012 Query 4177 CTTCATCACCCAGTACAGCACCGGGCAGGTCACCGTGGAGATGGAGTGGGAGCTCAAGAA 4236 ||||| || |||| | || || ||| || || || ||| || ||||| || Sbjct 11531013 TTTCATATCCTAGTATATAACTGGTCAGACGACAGTAGAAATGACATGAATACTCAAAAA 11531072 Query 4237 GGAAAACTCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACAACTACAACGACCCCCA 4296 ||| |||| ||| ||||| ||||| || ||||| | |||||| ||| ||| Sbjct 11531073 AGAATACTCAAAGTCATGGAATCCAGAAATGAAGTAC---ATCAACTATAACAGTCCCAC 11531129 Query 4297 GTTTGTGGACTTTGCCCC 4314 | ||||| |||||||| Sbjct 11531130 CTGTGTGGCTTTTGCCCC 11531147 >seq70781 Length=5255463 Score = 78.8 bits (86), Expect = 3e-11 Identities = 116/163 (71%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1361 GGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAAC 1420 || ||||||||| | ||| |||| | |||| || ||||| || |||||| | | Sbjct 3549812 GGAAAGACCAACTTTGCG-AGGCTGCTGTCCACGACGTTCCCTTCTATGGCTGCCTCAGG 3549754 Query 1421 TGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAG 1480 |||| | |||| |||||| | ||||||||||||| || |||| |||||| || Sbjct 3549753 CGGACAACTGAAGACTTTC-----AGAGACTGTGTGGACAGTTTGATCATCTGGTGGTAG 3549699 Query 1481 GAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCA 1523 |||||||||||||| || || | ||||| || ||| ||| Sbjct 3549698 GAGGGAAAGATGACAGTGAAAATGATGGAATCGGCTAAGACCA 3549656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14730350161150