Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq71756 250 7e-63 >seq71756 Length=1205245 Score = 250 bits (276), Expect = 7e-63 Identities = 357/501 (71%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 1329 GTTTGGGCCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCC 1388 |||||| |||| ||||| | ||||||| ||| | || ||||| | ||| ||| |||| Sbjct 231770 GTTTGGCCCCGTGACCACAGTAAAGACCAGCATGACAGAGGCCATTGTCCATGCCATGCC 231829 Query 1389 CTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAA 1448 || || |||| | | |||||| ||||||||||||||||||||| || || ||| ||| Sbjct 231830 CTCCTTTGGCTACCTTAACTGGGCCAATGAGAACTTTCCCTTCAGTGACTGAATCGGCAA 231889 Query 1449 GATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGC 1508 | || | ||||||||||||||||| |||||||| |||| | ||||| | ||||||| Sbjct 231890 GGTGATTATCTGGTGGGAGGAGGGGAAGATGACTTTCAAGATGGTGGAAACTACCAAGGC 231949 Query 1509 CATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGA 1568 | |||||| ||||||||| | || |||| || || |||| || ||| || || | || Sbjct 231950 CGCTCTCGGGGGCAGCAAGATCCGTGTGGGTCAGAAAGGCAAATCTTCCACCGAGCTGGA 232009 Query 1569 CCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAG 1628 || || ||| | ||| | ||| || || |||||||| || | |||| |||| | | Sbjct 232010 CCAGACTCCCATCATCCTGACCAGCAGCAAGGACATGTGCACCACGGTTGAGGGGACCCG 232069 Query 1629 CACCACCTTCGAGCACCAGCAGCCGTTGCAGGACCGGATGTTCAAATTTGAACTCA---- 1684 |||| ||| || || ||||| | | || |||| |||||||||||| | || | Sbjct 232070 TACCATCTTGGACCATAAGCAGACCCTCCAAGACC-AATGTTCAAATTTTAGCTAAGACG 232128 Query 1685 --CCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGAAGCAGGAAGTCAAAGAGTTCTT 1742 | || |||||| | ||||||||||| | ||||| ||||| |||||||| | || Sbjct 232129 TTCTCGTTGTCTGGGACTGGACTTTGGCAAAATCACGAAACAGGAGGTCAAAGACT--TT 232186 Query 1743 CCGCTGGGCCAGTGATCACGTGACCGAGGTGGCGCATGAGTTCTACGTCAGAAAGGGCGG 1802 | | ||||| ||||||| || || | | || |||| ||||| || | | Sbjct 232187 CTGATGGGCTTCTGATCACAGCACAGA-----CCGAGGAATTCTTGGTCAGGAAAGCAGA 232241 Query 1803 AGCCAGCAAAAGACCCGCCCC 1823 | |||| || ||||||| ||| Sbjct 232242 ATCCAGGAAGAGACCCGTCCC 232262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14982943532700