Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq71756 241 4e-60 >seq71756 Length=1205245 Score = 241 bits (266), Expect = 4e-60 Identities = 318/439 (72%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 1228 GTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCC 1287 |||||| |||| ||||| | ||||||| ||| | || ||||| | ||| ||| |||| Sbjct 231770 GTTTGGCCCCGTGACCACAGTAAAGACCAGCATGACAGAGGCCATTGTCCATGCCATGCC 231829 Query 1288 CTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAA 1347 || || |||| | | |||||| ||||||||||||||||||||| ||| || ||| ||| Sbjct 231830 CTCCTTTGGCTACCTTAACTGGGCCAATGAGAACTTTCCCTTCAGTGACTGAATCGGCAA 231889 Query 1348 GATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGC 1407 | || | ||||||||||||||||| |||||||| |||| | ||||| | ||||||| Sbjct 231890 GGTGATTATCTGGTGGGAGGAGGGGAAGATGACTTTCAAGATGGTGGAAACTACCAAGGC 231949 Query 1408 CATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGA 1467 | |||||| ||||||||| | || |||| || || |||| || ||| || || | || Sbjct 231950 CGCTCTCGGGGGCAGCAAGATCCGTGTGGGTCAGAAAGGCAAATCTTCCACCGAGCTGGA 232009 Query 1468 CCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAG 1527 || || ||| | ||| | ||| || || |||||||| || | |||| |||| | | Sbjct 232010 CCAGACTCCCATCATCCTGACCAGCAGCAAGGACATGTGCACCACGGTTGAGGGGACCCG 232069 Query 1528 CACCACCTTCGAGCACCAGCAGCCTCTCCAGGACCGGATGTTTAAGTTCGAACTCA---- 1583 |||| ||| || || ||||| | ||||| |||| ||||| || || | || | Sbjct 232070 TACCATCTTGGACCATAAGCAGACCCTCCAAGACC-AATGTTCAAATTTTAGCTAAGACG 232128 Query 1584 --CCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAAAGCAGGAAGTCAAAGAGTTCTT 1641 | || |||||| | ||||||||||| | || || ||||| |||||||| | || Sbjct 232129 TTCTCGTTGTCTGGGACTGGACTTTGGCAAAATCACGAAACAGGAGGTCAAAGACT--TT 232186 Query 1642 CCGCTGGGCCAGTGATCAC 1660 | | ||||| ||||||| Sbjct 232187 CTGATGGGCTTCTGATCAC 232205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13934201433100