Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq21 255 2e-64 seq61 178 4e-41 seq24 105 2e-19 >seq21 Length=28505965 Score = 255 bits (282), Expect = 2e-64 Identities = 351/485 (72%), Gaps = 12/485 (2%) Strand=Plus/Plus Query 1344 AACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAAT 1403 || || || |||||||| ||||| | || | ||| || || || |||||||||||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1404 GAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAG 1463 ||||| |||||||||| ||||| ||| |||||| | ||||||||||| ||||||||| Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1464 ATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTG 1523 ||||| |||| ||||| || ||||| ||||||||| | |||||||| | ||| Sbjct 15521513 ATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATTCTCTAGAGCAGCAAGGTCCCTGTG 15521572 Query 1524 GACCAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAAC 1583 | |||||| |||| ||||| || |||| |||| |||||| || ||| | ||| |||| Sbjct 15521573 CATCAGAAAGGCAAATCCTCCACCAAGATTGACCAGACTCCTGTTATCCTAACCCACAAC 15521632 Query 1584 ACCAACATGTGCGCCGTGATTGACGGGAACTCA-ACGACCTTCGAACACCAGCAGCCGTT 1642 | |||||||| || || |||| ||||| ||| || | ||| || ||| ||| Sbjct 15521633 AAGGACATGTGCCCCTTGGTTGA-GGGAAATCACACCATCTTGGAGCACTGGCAAGACCC 15521691 Query 1643 GCAAGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGACTTTGGGAAGGT 1702 |||||| |||||||||||||||| || || | | |||||| ||| | || | Sbjct 15521692 CCAAGACAGGATGTTCAAATTTGAGCTGACTCATCCTCTGGAAACGGAC---AGCAAAAT 15521748 Query 1703 CACCAAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCAAAGGATCACGTGGTT--GAGGTG 1760 |||||| ||||| || |||||||||||||| ||| ||||| | ||| || ||| Sbjct 15521749 CACCAAACAGGAGGTTGAAGACTTTTTCCGGAAGGCTTCTGATCA--TAGTTCGGAAGTG 15521806 Query 1761 GAGCATGAATTCTACGTCAAAAAGGGTGGAGCCAAGAAAAGACCCGCCC---CCAGTGAC 1817 | ||||||| ||||| |||| || ||| ||| ||||| |||| ||||||| Sbjct 15521807 ACTGAGGAATTCTTGGTCAAGAAGGCAGGGTCCAGGAAGAGACCTGCCCCTTCCAGTGAT 15521866 Query 1818 GCAGA 1822 | ||| Sbjct 15521867 GGAGA 15521871 >seq61 Length=12943516 Score = 178 bits (196), Expect = 4e-41 Identities = 352/509 (69%), Gaps = 34/509 (7%) Strand=Plus/Minus Query 1302 AACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACATCGCGGAGGCCATA 1361 |||||||| || |||||| ||||| || || ||||||||| | ||| |||| Sbjct 4914003 AACACCATTTGTG-GTTTGGCCCTGCGACCTTGGGAAAGACCAACTTGGCG-AGGCTGCT 4913946 Query 1362 GCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAAC 1421 ||||| ||| |||||||| || || || | ||||| ||| ||||||||||||| Sbjct 4913945 GCCCATGATGTTCCCTTCTATGGCTGGGTCAGGTGGACAGCTGAAGACTTTCCCTTCAAA 4913886 Query 1422 GACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGACCGCCAAGGTCGTG 1481 || || || ||| || | | ||||||||||||||||| |||| ||| | || | | Sbjct 4913885 GATTGCCTCCACAGGAGGATCATCTGGTGGGAGGAGGGAAAGACGACGGTGAAAATGACG 4913826 Query 1482 GAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGACCAGAAATGCAAGTCC 1541 || || ||||| |||||||| || || || |||| | |||||| |||||| |||| || Sbjct 4913825 GAATCCGCCAAGGCCATTCT-GGGGGCAGTGAGGTCCTCGTGGATCAGAAACGCAAAACC 4913767 Query 1542 TCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTG 1601 || |||| || ||||| |||| |||| ||| ||||||||||||| Sbjct 4913766 TC-CCCCAAGCGGAAGCGACTGCCGTCTTCGTGACCAGCAACACCAACATG--------- 4913717 Query 1602 ATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAA 1661 || | ||| || ||| ||||||||||||||| | |||||||||||||| ||| Sbjct 4913716 -TTCAGGGG--------GATCTT-GAACACCAGCAGCCGCTCCAAGACCGGATGTTTAAA 4913667 Query 1662 TTTGAACTCACCCGCCGTCTGGATCATGACTTTGGGAAGGTCACCAAGCAGGAAGTCAAA 1721 | || || | |||| | || | |||| || | || | || ||||| || ||| | Sbjct 4913666 TCTG--CTTA-ACGCCATTGGGGGCCTGAC-TTAGCAAACTGACTAAGCAAGAGGTC--A 4913613 Query 1722 GACTTTTTCCGGTGGGCAAAGGATCACGTGGTTGAGGTGGAGCATGAATTCTACGTCAAA 1781 ||| |||||| |||| |||||| || ||| ||| | ||| || | ||| Sbjct 4913612 GAC--TTTCCGCGGGGCCTCTGATCACATGACTGACGTG--ACCTGAGGGCTTTGCCAAG 4913557 Query 1782 AAGGGTGGAGCCAAGAAAAGACCCGCCCC 1810 | || |||| |||| || |||||||||| Sbjct 4913556 GA-GGCGGAGTCAAGGAAGGACCCGCCCC 4913529 >seq24 Length=27450550 Score = 105 bits (116), Expect = 2e-19 Identities = 230/339 (68%), Gaps = 14/339 (4%) Strand=Plus/Minus Query 2839 GACAATAACGAGGGCGCCGACGGAGTGGGTAATTCCTCGGGAAATTGGCATTGCGATTCC 2898 |||| |||| |||| ||| | | || |||| |||| ||||||||| || ||||| Sbjct 7342026 GACAGTAACCAGGGTGCCTATAAGGAGGCTAATGCCTCACAAAATTGGCACTGAGATTCT 7341967 Query 2899 ACATGGATGGGCGACAGAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTAC 2958 ||||||| | ||||| | | |||| ||| ||| | ||| ||||||| |||| Sbjct 7341966 CAATGGATGAGAAACAGACT--TTACCATGTTCACATGAATCCGGGTCCTGCCC--CTAC 7341911 Query 2959 AACAACCACCTCTACAAACAAATTTCCAGCCAATCAGGAGCCTCGAACGA-----CAATC 3013 ||||||||||| | ||| ||||| || | ||| || ||| || || | Sbjct 7341910 AACAACCACCTTTTTTGACAGATTTCTAGTCTTAGAGGGGC--AGAAGGAAATGTCAGTG 7341853 Query 3014 ACTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGACTTCAACAGATTCCACTGCCACT 3073 ||||||||| | |||||| || ||| | || |||||||| ||| ||||| | || Sbjct 7341852 CCTACTTTGGATGCAGCACTCCCTGGAGATAGTTTGACTTTAACCAGTTCCATAG--ACA 7341795 Query 3074 TTTCACCACGTGACTGGCAAAGACTCATCAACAACAACTGGGGATTCCGACCCAAGAGAC 3133 |||| | |||| ||||| ||||| |||| | ||||| ||||| | ||||| || | Sbjct 7341794 GAGCACCCAGAGACTAGCAAACACTCACCAACTATCACTGGAGATTCTGTCCCAA-AGGC 7341736 Query 3134 TCAACTTCAAGCTCTTTAACATTCAAGTCAAAGAGGTCA 3172 | | || | ||||| || || ||||| ||| ||| Sbjct 7341735 TTCAAAGGAAAATGTTTAATATCCACGTCAACGAGATCA 7341697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860112618340