Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq61 96.9 1e-16 seq21 87.8 6e-14 >seq61 Length=12943516 Score = 96.9 bits (106), Expect = 1e-16 Identities = 173/246 (70%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 1518 AAAAGAAACGCCATATG-GCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGA 1576 ||| ||||| |||| || | | | || ||||| ||| || ||||||||| | || || Sbjct 4914009 AAACGAAACACCATTTGTGGTTT--GGCCCTGCGACCTTGGGAAAGACCAACTTGGC-GA 4913953 Query 1577 AGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCC 1636 ||| |||||||| ||| |||||||||||||| || | ||||| ||| ||||||| Sbjct 4913952 GGCTGCTGCCCATGATGTTCCCTTCTATGGCTGGGTCAGGTGGACAGCTGAAGACTTTCC 4913893 Query 1637 TTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGAC--TAAT 1694 || || ||||| | | | | | | || ||||||||||||||||| | ||| | | Sbjct 4913892 CTTCAAAGATTGCCTCCACAGGAGGATCATCTGGTGGGAGGAGGGAAAGACGACGGTGAA 4913833 Query 1695 AAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACCAGAAA 1754 || | | ||||| || || || ||| |||| || || |||| || || |||||| Sbjct 4913832 AATGACG--GAATCCGCCAAGGCCATTCTGGG-GGCAGTGAGGTCCTCGTGGATCAGAAA 4913776 Query 1755 TGTAAA 1760 | ||| Sbjct 4913775 CGCAAA 4913770 >seq21 Length=28505965 Score = 87.8 bits (96), Expect = 6e-14 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 1566 AACATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAAT 1625 || || || || || |||||||| || | | |||||||||||| |||||||| ||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1626 GAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAA 1685 ||||| ||||| || | ||| || ||||| ||| | || |||||||| ||||| || Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1686 ATGACTAATAAGGTTGTTGAATCTGCAAAAGCAATT 1721 ||||| ||| || ||||| || || || ||| Sbjct 15521513 ATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATT 15521548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16226449415935