Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq21 214 5e-52 seq61 178 4e-41 >seq21 Length=28505965 Score = 214 bits (236), Expect = 5e-52 Identities = 313/442 (71%), Gaps = 3/442 (1%) Strand=Plus/Plus Query 1341 AACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAAT 1400 || || || || ||||| ||||| ||| || | ||| ||||| || |||||||||||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1401 GAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAG 1460 ||||| |||||||||| || ||| ||| |||||| | ||||||||||| ||||| ||| Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1461 ATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTG 1520 ||||| |||| ||||| ||||||||||||||| | |||||||| | ||| Sbjct 15521513 ATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATTCTCTAGAGCAGCAAGGTCCCTGTG 15521572 Query 1521 GACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAAC 1580 | || || |||| || || || |||| || | ||||| || ||| | ||| |||| Sbjct 15521573 CATCAGAAAGGCAAATCCTCCACCAAGATTGACCAGACTCCTGTTATCCTAACCCACAAC 15521632 Query 1581 ACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTG 1640 | |||||||| || || |||| || || ||||| ||| ||||| ||| | Sbjct 15521633 AAGGACATGTGCCCCTTGGTTGAGGGAAATCACACCATCTTGGAGCACTGGCAAGACCCC 15521692 Query 1641 CAGGACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAGGTC 1700 || ||| ||||||| ||||||| || || | | | |||| ||| | || || Sbjct 15521693 CAAGACAGGATGTTCAAATTTGAGCTGACTCATCCTCTGGAAACGGAC---AGCAAAATC 15521749 Query 1701 ACCAAACAGGAAGTAAAGGACTTTTTCCGGTGGGCTTCCGATCACGTGACTGACGTGGCT 1760 ||||||||||| || | |||||||||||| |||||| ||||| | || ||| || Sbjct 15521750 ACCAAACAGGAGGTTGAAGACTTTTTCCGGAAGGCTTCTGATCATAGTTCGGAAGTGACT 15521809 Query 1761 CATGAGTTCTACGTCAGAAAGG 1782 | || |||| |||| |||| Sbjct 15521810 GAGGAATTCTTGGTCAAGAAGG 15521831 >seq61 Length=12943516 Score = 178 bits (196), Expect = 4e-41 Identities = 440/655 (67%), Gaps = 51/655 (8%) Strand=Plus/Minus Query 1104 ATCAAGGCCGCGCTGGACAATGCC-TCCAAGATCATGAGCCTGACAAAGACGGCTCCGGA 1162 || ||| | || |||||||| ||| | ||| || ||| |||||| || | ||| | ||| Sbjct 4914180 ATTAAGTCAGCTCTGGACAACGCCATTGAAG-TCGTGAACCTGACCAAAATGGCCCAGGA 4914122 Query 1163 CTACCTGGTGGGCAGCAACCCGCCGGAGGACATTACCAAAAATCGGATCTACCAAATCCT 1222 |||||||||| || || |||| |||| || ||||||||||||| || ||| | Sbjct 4914121 TTACCTGGTGGTT-GCCACGGCTCGGAAATCATTCCCCAAAATCGGATCTATCAGATCTT 4914063 Query 1223 GGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAA 1282 || ||||| ||| || | || | | || || || || | Sbjct 4914062 CAAGATGAACACCTACAATGCTG-GTTGGATGGTGCCATCATC-----------GCCA-- 4914017 Query 1283 GAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAA 1342 || || || | |||||||| || ||||| || || || ||| || ||||| Sbjct 4914016 ---GTATGGAAAACGAAACACCATTTGTGG-TTTGGCCCTGCGACCTTGGGAAAGACCAA 4913961 Query 1343 CATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGA 1402 | | ||| | || ||||| | || |||||||| ||||| || | ||||| ||| Sbjct 4913960 CTTGGCG-AGGCTGCTGCCCATGATGTTCCCTTCTATGGCTGGGTCAGGTGGACAGCTGA 4913902 Query 1403 GAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGAT 1462 ||||||||||||| |||||| || ||| || | | ||||||||||||||||| |||| Sbjct 4913901 AGACTTTCCCTTCAAAGATTGCCTCCACAGGAGGATCATCTGGTGGGAGGAGGGAAAGAC 4913842 Query 1463 GACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGA 1522 ||||| || | ||| |||||||||||||||||| || || |||| | |||||| Sbjct 4913841 GACGGTGAAAATGACGGAATCCGCCAAGGCCATTCTGGG-GGCAGTGAGGTCCTCGTGGA 4913783 Query 1523 CCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACAC 1582 || || |||| | || |||| ||| | ||| |||| |||| ||| |||||| Sbjct 4913782 TCAGAAACGCAAAACCTC-CCCCAAGCGGAAGCGACTGCCGTCTTCGTGACCAGCAACAC 4913724 Query 1583 CAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTGCA 1642 ||||||| || | ||| | ||| || || ||||||||||| || Sbjct 4913723 CAACATG----------TTCAGGGG--------GATCTT-GAACACCAGCAGCCGCTCCA 4913683 Query 1643 GGACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAGGTCAC 1702 |||||||||||| ||| || |||| |||| || || | |||| || | || | || Sbjct 4913682 AGACCGGATGTTTAAATCTG--CTTA-ACGCCATTGGGGGCCTGAC-TTAGCAAACTGAC 4913627 Query 1703 CAAACAGGAAGTAAAGGACTTTTTCCGGTGGGCTTCCGATCACGTGACTGACGTG 1757 || || || || | ||| |||||| |||| || |||||| ||||||||||| Sbjct 4913626 TAAGCAAGAGGTCA--GAC--TTTCCGCGGGGCCTCTGATCACATGACTGACGTG 4913576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010505661635