Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq21 214 5e-52 seq61 132 1e-27 >seq21 Length=28505965 Score = 214 bits (236), Expect = 5e-52 Identities = 328/467 (70%), Gaps = 3/467 (1%) Strand=Plus/Plus Query 1395 AACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAAT 1454 || || || || ||||| ||||| ||| || | ||| ||||| || |||||||||||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1455 GAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAG 1514 ||||| ||||| |||| || ||| ||| |||||| | ||||||||||| ||||| ||| Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1515 ATGACGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTG 1574 ||||| |||| || || |||||||||||| || | |||||||| | ||| Sbjct 15521513 ATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATTCTCTAGAGCAGCAAGGTCCCTGTG 15521572 Query 1575 GACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAAC 1634 | || || |||| || || || |||| |||| ||||| || ||| | ||| |||| Sbjct 15521573 CATCAGAAAGGCAAATCCTCCACCAAGATTGACCAGACTCCTGTTATCCTAACCCACAAC 15521632 Query 1635 ACCAACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTC 1694 | |||||||| | | | || ||||| |||| ||| |||||| ||| | | Sbjct 15521633 AAGGACATGTGCCCCTTGGTTGAGGGAAATCACACCATCTTGGAGCACTGGCAAGACCCC 15521692 Query 1695 CAGGACCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTC 1754 || ||| |||||||||| || ||||| || | | ||||| ||| |||| || Sbjct 15521693 CAAGACAGGATGTTCAAATTTGAGCTGACTCATCCTCTGGAAACGGAC---AGCAAAATC 15521749 Query 1755 ACCAAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCGTCAGATCACGTGACCGAGGTGACT 1814 ||||| ||||| || |||||||||||||| ||| || ||||| | || |||||| Sbjct 15521750 ACCAAACAGGAGGTTGAAGACTTTTTCCGGAAGGCTTCTGATCATAGTTCGGAAGTGACT 15521809 Query 1815 CACGAGTTTTACGTCAGAAAGGGTGGAGCTAGAAAGAGGCCCGCCCC 1861 | || || | |||| |||| || | || ||||| || ||||| Sbjct 15521810 GAGGAATTCTTGGTCAAGAAGGCAGGGTCCAGGAAGAGACCTGCCCC 15521856 >seq61 Length=12943516 Score = 132 bits (146), Expect = 1e-27 Identities = 311/462 (67%), Gaps = 33/462 (7%) Strand=Plus/Minus Query 1353 AACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATC 1412 |||||||| || ||||| || || || ||| || |||||| | ||| | || Sbjct 4914003 AACACCATTTGTGG-TTTGGCCCTGCGACCTTGGGAAAGACCAACTTGGCG-AGGCTGCT 4913946 Query 1413 GCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAACTTTCCGTTCAAC 1472 ||||| | || |||||||| ||||| || | ||||| ||| ||||||| ||||| Sbjct 4913945 GCCCATGATGTTCCCTTCTATGGCTGGGTCAGGTGGACAGCTGAAGACTTTCCCTTCAAA 4913886 Query 1473 GATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTA 1532 |||||| || ||| || | | ||||||||||||||||| |||| ||||| || | Sbjct 4913885 GATTGCCTCCACAGGAGGATCATCTGGTGGGAGGAGGGAAAGACGACGGTGAAAATGACG 4913826 Query 1533 GAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCA 1592 || |||||||||||| ||||| || || |||| | |||||| || || |||| | Sbjct 4913825 GAATCCGCCAAGGCCATTCTGGG-GGCAGTGAGGTCCTCGTGGATCAGAAACGCAAAACC 4913767 Query 1593 TCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCGGTC 1652 || |||| || | ||| |||| |||| ||| |||||||||||||| | || Sbjct 4913766 TC-CCCCAAGCGGAAGCGACTGCCGTCTTCGTGACCAGCAACACCAACATGTTCAGGGGG 4913708 Query 1653 ATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGGACCGGATGTTCAAG 1712 ||| | || ||||| || || ||||| ||||||||||| || Sbjct 4913707 ATC-------------------TTGAACACCAGCAGCCGCTCCAAGACCGGATGTTTAAA 4913667 Query 1713 TTCGAGCTCACCAAGCGCCT-GGAGCACGACTTTGGCAAGGTCACCAAGCAGGAAGTCAA 1771 | ||| | | || | || || ||| || |||| | || ||||| || ||| Sbjct 4913666 T--CTGCTTA--ACGCCATTGGGGGCCTGAC-TTAGCAAACTGACTAAGCAAGAGGTC-- 4913614 Query 1772 AGACTTTTTCCGGTGGGCGTCAGATCACGTGACCGAGGTGAC 1813 |||| |||||| |||| || |||||| |||| || ||||| Sbjct 4913613 AGAC--TTTCCGCGGGGCCTCTGATCACATGACTGACGTGAC 4913574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15141699593020