Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq21 232 2e-57 seq61 199 1e-47 >seq21 Length=28505965 Score = 232 bits (256), Expect = 2e-57 Identities = 332/467 (71%), Gaps = 3/467 (1%) Strand=Plus/Plus Query 1358 AACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAAT 1417 || || || || ||||| ||||| ||| || | ||| ||||| ||||||||||||||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1418 GAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAG 1477 ||||| |||||||||| ||| ||| ||| |||||| | ||||||||||| ||||| ||| Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1478 ATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTG 1537 ||||| |||| ||||| |||||||||||||||||| |||||||||| | ||| Sbjct 15521513 ATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATTCTCTAGAGCAGCAAGGTCCCTGTG 15521572 Query 1538 GACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAAC 1597 | || || |||| || ||| || |||| |||| || || || ||| | ||| |||| Sbjct 15521573 CATCAGAAAGGCAAATCCTCCACCAAGATTGACCAGACTCCTGTTATCCTAACCCACAAC 15521632 Query 1598 ACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTG 1657 | |||||||| || || |||| || || ||||| ||| |||||| ||| Sbjct 15521633 AAGGACATGTGCCCCTTGGTTGAGGGAAATCACACCATCTTGGAGCACTGGCAAGACCCC 15521692 Query 1658 CAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGACTTTGGCAAGGTG 1717 || ||| |||||||||||||||| || || | | |||||| ||| |||| | Sbjct 15521693 CAAGACAGGATGTTCAAATTTGAGCTGACTCATCCTCTGGAAACGGAC---AGCAAAATC 15521749 Query 1718 ACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCGCAGGATCACGTGACCGAGGTGGCG 1777 || || ||||| || |||| || ||||| ||| ||||| | || ||| | Sbjct 15521750 ACCAAACAGGAGGTTGAAGACTTTTTCCGGAAGGCTTCTGATCATAGTTCGGAAGTGACT 15521809 Query 1778 CATGAGTTCTACGTCAGAAAGGGTGGAGCCAACAAAAGACCCGCCCC 1824 | || |||| |||| |||| || ||| || ||||| ||||| Sbjct 15521810 GAGGAATTCTTGGTCAAGAAGGCAGGGTCCAGGAAGAGACCTGCCCC 15521856 >seq61 Length=12943516 Score = 199 bits (220), Expect = 1e-47 Identities = 362/518 (70%), Gaps = 34/518 (7%) Strand=Plus/Minus Query 1307 GGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCACGGGCAAGACCAACATCGCG 1366 || || || |||||||| || |||||| || || ||| ||| ||||||||| | ||| Sbjct 4914012 GGAAAACGAAACACCATTTGTG-GTTTGGCCCTGCGACCTTGGGAAAGACCAACTTGGCG 4913954 Query 1367 GAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTT 1426 | || ||||| | || |||||||| ||||| |||| ||||| ||| ||||| Sbjct 4913953 -AGGCTGCTGCCCATGATGTTCCCTTCTATGGCTGGGTCAGGTGGACAGCTGAAGACTTT 4913895 Query 1427 CCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCC 1486 |||||||| |||||| || ||| || | | ||||||||||||||||| |||| ||||| Sbjct 4913894 CCCTTCAAAGATTGCCTCCACAGGAGGATCATCTGGTGGGAGGAGGGAAAGACGACGGTG 4913835 Query 1487 AAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAG 1546 || | ||| ||||||||||||||||| || ||||| |||| | |||||| || || Sbjct 4913834 AAAATGACGGAATCCGCCAAGGCCATTCT-GGGGGCAGTGAGGTCCTCGTGGATCAGAAA 4913776 Query 1547 TGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATG 1606 |||| | ||| |||| || | || |||| |||| ||| ||||||||||||| Sbjct 4913775 CGCAAAACCTCC-CCCAAGCGGAAGCGACTGCCGTCTTCGTGACCAGCAACACCAACATG 4913717 Query 1607 TGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGACCGG 1666 || | ||| | ||| || |||||||||||| | || |||||| Sbjct 4913716 ----------TTCAGGGG--------GATCTT-GAACACCAGCAGCCGCTCCAAGACCGG 4913676 Query 1667 ATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGACTTTGGCAAGGTGACAAAGCAG 1726 ||||| |||| || || | |||| | || || |||| || |||| |||| ||||| Sbjct 4913675 ATGTTTAAATCTG--CTTA-ACGCCATTGGGGGCCTGAC-TTAGCAAACTGACTAAGCAA 4913620 Query 1727 GAAGTCAAAGAGTTCTTCCGCTGGGCGCAGGATCACGTGACCGAGGTGGCGCATGAGTTC 1786 || ||| ||| | |||||| |||| |||||| |||| || ||| | |||| | Sbjct 4913619 GAGGTC--AGACT--TTCCGCGGGGCCTCTGATCACATGACTGACGTG--ACCTGAGGGC 4913566 Query 1787 TACGTCAGAAAGGGTGGAGCCAACAAAAGACCCGCCCC 1824 | | || | || |||| ||| || |||||||||| Sbjct 4913565 TTTGCCA-AGGAGGCGGAGTCAAGGAAGGACCCGCCCC 4913529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14984906845755