Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq61 136 1e-28 seq21 132 1e-27 >seq61 Length=12943516 Score = 136 bits (150), Expect = 1e-28 Identities = 215/302 (71%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 1216 GGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCG 1275 || || |||||||| | || ||| || | ||||||| || ||||||||| | ||| Sbjct 4914012 GGAAAACGAAACACCATTTGTG-GTTTGGCCCTGCGACCTTGGGAAAGACCAACTTGGCG 4913954 Query 1276 GAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTT 1335 ||||| |||||||| ||| || |||||||| || || | ||||| || ||||| Sbjct 4913953 -AGGCTGCTGCCCATGATGTTCCCTTCTATGGCTGGGTCAGGTGGACAGCTGAAGACTTT 4913895 Query 1336 CCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAAATGACCGCC 1395 || ||||| || ||| || | | | ||| ||||||||||||||||| || | ||| | Sbjct 4913894 CCCTTCAAAGATTGCCTCCACAGGAGGATCATCTGGTGGGAGGAGGGAAAGACGACGGTG 4913835 Query 1396 AAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTGAGAGTGGACCAAAAA 1455 ||| || |||| | |||||||| |||||||| || | ||| ||||| || ||| Sbjct 4913834 AAAATGACGGAATCCGCCAAGGCCATTCTGGG-GGCAGTGAGGTCCTCGTGGATCAGAAA 4913776 Query 1456 TGCAAAGCTTCGGTTCCGATC-GAACCGACGCCGGTCATTATTACCAGTAACACCAACAT 1514 ||||| | || || | | ||| |||| | ||| | | ||||| ||||||||||| Sbjct 4913775 CGCAAAACCTC--CCCCAAGCGGAAGCGACTGCCGTCTTCGTGACCAGCAACACCAACAT 4913718 Query 1515 GT 1516 || Sbjct 4913717 GT 4913716 >seq21 Length=28505965 Score = 132 bits (146), Expect = 1e-27 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 1267 AACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAAC 1326 || || || ||||| |||||||| || || || |||||| || || ||||||||||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1327 GAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAA 1386 ||||| ||||| |||| |||||| ||| || ||||||||||||||||| ||||| || Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1387 ATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCT 1424 ||||| ||| ||||||| | |||||||| ||||| Sbjct 15521513 ATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATTCT 15521550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14908110398115