Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq21 86.0 2e-13 >seq21 Length=28505965 Score = 86.0 bits (94), Expect = 2e-13 Identities = 234/357 (66%), Gaps = 17/357 (5%) Strand=Plus/Plus Query 1415 TATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATG 1474 ||||||||||| |||||||| |||||||| || || || ||| Sbjct 15521429 TATGGCTGTGTCAACTGGACCAATGAGAAGTTTCCCTTCACTGACTGCCACGATAAGATG 15521488 Query 1475 TTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCA-T 1533 | ||||||||||| ||||| |||||||| |||| ||||||| |||||||||||| | Sbjct 15521489 ATTATCTGGTGGGAAGAGGGGAAGATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATT 15521548 Query 1534 CTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAAG-TAGACT 1592 || | | | || || | ||| |||| ||| | |||||||| |||| | ||| Sbjct 15521549 CTCTAGAGCAGCAAG-GTCCCTGTGCATCAGAAAGGCAAATCCTC-CACCAAGATTGACC 15521606 Query 1593 CTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACTC-C 1651 || || || || | ||| ||| | ||||||| |||| || ||||| || | Sbjct 15521607 AGACTCCTGTTATCCTAACCCACAACAAGGACATGTGCCCCTTGGTTGA-GGGAAATCAC 15521665 Query 1652 ACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTCAGATTTGA----ACTCAT 1707 || | ||| || ||| ||| | ||||| | ||||||| |||||| |||||| Sbjct 15521666 ACCATCTTGGAGCACTGGCAAGACCCCCAAGACAGGATGTTCAAATTTGAGCTGACTCAT 15521725 Query 1708 GCGGCGGCTCCCGCCAGATTTTGGCAAGATTACCAAGCAGGAAGTCAAAGACTTTTT 1764 | || | | || |||| || ||||| ||||| || |||||||||| Sbjct 15521726 CCTCTGGAAACGGACA-------GCAAAATCACCAAACAGGAGGTTGAAGACTTTTT 15521775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14904910546130