Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq61 113 1e-21 seq21 113 1e-21 >seq61 Length=12943516 Score = 113 bits (124), Expect = 1e-21 Identities = 138/187 (74%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 1553 GGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTC 1612 || ||||||||| |||||||||||| | || |||||| |||||||| ||| |||||| Sbjct 4913986 GGCCCTGCGACCTTGGGAAAGACCAACTTGGC-GAGGCTGCTGCCCATGATGTTCCCTTC 4913928 Query 1613 TATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATG 1672 |||||||| || | ||||| ||| |||| || || || || ||| | | | | | Sbjct 4913927 TATGGCTGGGTCAGGTGGACAGCTGAAGACTTTCCCTTCAAAGATTGCCTCCACAGGAGG 4913868 Query 1673 CTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATA 1732 | || ||||||||||||||||| | ||| ||| | ||||||||| || || || Sbjct 4913867 ATCATCTGGTGGGAGGAGGGAAAGACGACGGTGAAAATGACGGAATCCGCCAAGGCCATT 4913808 Query 1733 CTGGGGG 1739 ||||||| Sbjct 4913807 CTGGGGG 4913801 >seq21 Length=28505965 Score = 113 bits (124), Expect = 1e-21 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 1577 AACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAAT 1636 || || || ||||| |||||||| || | | |||||||||||| |||||||| ||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1637 GAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAA 1696 ||||| || || || | ||||||| ||||| ||| |||| |||||||| ||||| || Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1697 ATGACCAATAAAGTA-GTGGAATCCGCAAAAGCGATACT 1734 |||| || | ||| | ||||||||||| || || || || Sbjct 15521513 ATGA-CACTCAAGAAGGTGGAATCCGCCAAGGCCATTCT 15521550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16309645567545