Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq51 154 4e-34 seq24 154 4e-34 seq21 147 6e-32 seq61 113 1e-21 >seq51 Length=17238616 Score = 154 bits (170), Expect = 4e-34 Identities = 314/456 (69%), Gaps = 19/456 (4%) Strand=Plus/Minus Query 2751 CCCAACCAGCCTCAAGTTTGGGAGCTGATACAATGTCTGCGGGAGGTGGCGGCCCATTGG 2810 |||||| | || || ||||||| || |||| |||||| ||| | || ||| || || Sbjct 17088905 CCCAACAA--CTAAACTTTGGGATCTACTACAGTGTCTGTGGGGAGAGGGGGCACAGCGG 17088848 Query 2811 ---GCGACAATAACCAAGGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCG 2867 | |||| || ||| |||||| || | || |||||||| || |||| || || | Sbjct 17088847 TAGGTGACAGTAGCCAGGGTGCCTATAAGGAGGCTAATGCCTCATGATATTGCCACTGAG 17088788 Query 2868 ATTCCACGTGGATGGGGGACAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCA 2927 ||||| |||||| | ||||| | | |||| || ||| ||| | ||| || ||| Sbjct 17088787 ATTCCCAATGGATGAGAAACAGACT--TTACCATGTTCACATGAATCCAGGTCCTACCC- 17088731 Query 2928 GCTACAACAACCACCAGTACCGAGAGATCAAAAGCGGCTCCGTCGA-CGGAAGCAAC-GC 2985 |||||| |||||| | || |||| || || | | | |||| || | Sbjct 17088730 -CTACAATGACCACCTTTTTTGACAGATTTCTAGT--CTTAGAGGGGCAGAAGGAAATGT 17088674 Query 2986 CAACGCCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAG 3045 || ||||||||||||| |||||| |||||| | || ||||||||||||| ||||| || Sbjct 17088673 CAGTGCCTACTTTGGATGCAGCACTCCCTGGAGATAGTTTGACTTTAACCAGTTCCATAG 17088614 Query 3046 CCACTGGAGC-CCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCC 3104 || |||| ||| |||||| ||||| ||||| |||| || ||||| | ||| | ||| Sbjct 17088613 GCA---GAGCACCCAGAGACTAGCAAATACTCACCAACTACCACTGGAGATTCTGTCCCA 17088557 Query 3105 GGTCCCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGGTGCAGGACTCCA 3164 ||||| || ||||| || || || || ||||| ||| ||| |||||||| || Sbjct 17088556 AAGGCCTCAAAG-GAAAATGTTTAATATCCATGTCAACGAGATCATAATGCAGGACAGCA 17088498 Query 3165 CCACNNNNATCGCCAACAACCTCACCTCCACCGTCC 3200 ||| | |||| |||||||| | || |||| Sbjct 17088497 TCACAAGG-CCACCAATAACCTCACATTGACGGTCC 17088463 >seq24 Length=27450550 Score = 154 bits (170), Expect = 4e-34 Identities = 314/456 (69%), Gaps = 19/456 (4%) Strand=Plus/Minus Query 2751 CCCAACCAGCCTCAAGTTTGGGAGCTGATACAATGTCTGCGGGAGGTGGCGGCCCATTGG 2810 |||||| | || || || ||| || | || |||||| ||| | || ||| || ||| Sbjct 7342089 CCCAACAA--CTAAACTTCAGGATCTACTGCAGTGTCTGTGGGGAGAGGGGGCACAGTGG 7342032 Query 2811 ---GCGACAATAACCAAGGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCG 2867 | |||| |||||| |||||| || | || |||||||| | ||||||| || | Sbjct 7342031 TAGGTGACAGTAACCAGGGTGCCTATAAGGAGGCTAATGCCTCACAAAATTGGCACTGAG 7341972 Query 2868 ATTCCACGTGGATGGGGGACAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCA 2927 |||| |||||| | ||||| | | |||| || ||| ||| | |||| |||||| Sbjct 7341971 ATTCTCAATGGATGAGAAACAGACT--TTACCATGTTCACATGAATCCGGGTCCTGCCC- 7341915 Query 2928 GCTACAACAACCACCAGTACCGAGAGATCAAAAGCGGCTCCGTCGA-CGGAAGCAAC-GC 2985 |||||||||||||| | || |||| || || | | | |||| || | Sbjct 7341914 -CTACAACAACCACCTTTTTTGACAGATTTCTAGT--CTTAGAGGGGCAGAAGGAAATGT 7341858 Query 2986 CAACGCCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAG 3045 || ||||||||||||| |||||| |||||| | || ||||||||||||| ||||| || Sbjct 7341857 CAGTGCCTACTTTGGATGCAGCACTCCCTGGAGATAGTTTGACTTTAACCAGTTCCATAG 7341798 Query 3046 CCACTGGAGC-CCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCC 3104 || |||| ||| |||||| ||||| ||||| |||| | ||||| | ||| | ||| Sbjct 7341797 ACA---GAGCACCCAGAGACTAGCAAACACTCACCAACTATCACTGGAGATTCTGTCCCA 7341741 Query 3105 GGTCCCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGGTGCAGGACTCCA 3164 | ||| || ||||| || || || || ||||| ||| ||| |||||||| || Sbjct 7341740 AAGGCTTCAAAG-GAAAATGTTTAATATCCACGTCAACGAGATCATAATGCAGGACAGCA 7341682 Query 3165 CCACNNNNATCGCCAACAACCTCACCTCCACCGTCC 3200 ||| | |||| |||||||| | || |||| Sbjct 7341681 TCACAATG-CCACCAATAACCTCACATTGACGGTCC 7341647 >seq21 Length=28505965 Score = 147 bits (162), Expect = 6e-32 Identities = 233/332 (70%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 1370 AACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAAT 1429 || || || |||||||| ||||| | || | || ||||| || |||||||||||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1430 GAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAG 1489 || || |||||||| | |||||| || || ||| | || |||||||| ||||| ||| Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1490 ATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTC 1549 ||||| |||| ||| ||||||||||||||||| || | || ||||| | || Sbjct 15521513 ATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATTCTCTAGAGCAGCAAGGTCCCTGTG 15521572 Query 1550 GATCAGAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAAT 1609 |||||||| | |||||||| | ||||| || ||||| || |||| ||| Sbjct 15521573 CATCAGAAAGGCAAATCCTCCACCAAGATTGACCAGACTCCTGTTATCCTAAC--CCACA 15521630 Query 1610 ACAA--ACATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGC 1667 |||| ||||||| |||| || || ||| ||| | ||| || ||| ||| | Sbjct 15521631 ACAAGGACATGTGCCCCTTGGTTGAGGGAAATCACACCATCTTGGAGCACTGGCAAGACC 15521690 Query 1668 TGGAGGACCGCATGTTCAAATTTGAACTGACT 1699 | ||| | |||||||||||||| |||||| Sbjct 15521691 CCCAAGACAGGATGTTCAAATTTGAGCTGACT 15521722 >seq61 Length=12943516 Score = 113 bits (124), Expect = 1e-21 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 1361 GGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAAC 1420 || ||||||||| | ||| |||| ||||| ||| ||||| || ||||| || | Sbjct 4913971 GGAAAGACCAACTTGGCG-AGGCTGCTGCCCATGATGTTCCCTTCTATGGCTGGGTCAGG 4913913 Query 1421 TGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAG 1480 ||||| |||| |||||||||| || || || | ||| | | |||| ||||||||| Sbjct 4913912 TGGACAGCTGAAGACTTTCCCTTCAAAGATTGCCTCCACAGGAGGATCATCTGGTGGGAG 4913853 Query 1481 GAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAG 1540 |||||||||| ||| || || ||||||||||||||||| || |||||| || Sbjct 4913852 GAGGGAAAGACGACGGTGAAAATGACGGAATCCGCCAAGGCCATTCT-GGGGGCAGTGAG 4913794 Query 1541 GTGCGGGTCGATCAGAAATGTAAATCCTC 1569 || | || ||||||||| | ||| |||| Sbjct 4913793 GTCCTCGTGGATCAGAAACGCAAAACCTC 4913765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14741718094895