Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq21 237 5e-59 seq61 199 1e-47 >seq21 Length=28505965 Score = 237 bits (262), Expect = 5e-59 Identities = 333/467 (71%), Gaps = 3/467 (1%) Strand=Plus/Plus Query 1357 AACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAAT 1416 || || || || ||||| ||||| ||| || | ||| ||||| ||||||||||||||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1417 GAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAG 1476 ||||| |||||||||| || ||| ||| |||||| | ||||||||||| ||||| ||| Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1477 ATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTG 1536 ||||| |||| ||||| |||||||||||||||||| |||||||||| | ||| Sbjct 15521513 ATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATTCTCTAGAGCAGCAAGGTCCCTGTG 15521572 Query 1537 GACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAAC 1596 | || || |||| || ||| || |||| |||| || || || ||| | ||| |||| Sbjct 15521573 CATCAGAAAGGCAAATCCTCCACCAAGATTGACCAGACTCCTGTTATCCTAACCCACAAC 15521632 Query 1597 ACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTG 1656 | |||||||| || || |||| || || ||||| ||| |||||| ||| Sbjct 15521633 AAGGACATGTGCCCCTTGGTTGAGGGAAATCACACCATCTTGGAGCACTGGCAAGACCCC 15521692 Query 1657 CAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTG 1716 || ||| |||||||||||||||| || || | | |||||| ||| |||| | Sbjct 15521693 CAAGACAGGATGTTCAAATTTGAGCTGACTCATCCTCTGGAAACGGAC---AGCAAAATC 15521749 Query 1717 ACGAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTGGCG 1776 || || ||||| || |||| || ||||| ||| |||||| | || ||| | Sbjct 15521750 ACCAAACAGGAGGTTGAAGACTTTTTCCGGAAGGCTTCTGATCATAGTTCGGAAGTGACT 15521809 Query 1777 CATGAGTTCTACGTCAGAAAGGGCGGAGCCAGCAAAAGACCCGCCCC 1823 | || |||| |||| |||| || |||| || ||||| ||||| Sbjct 15521810 GAGGAATTCTTGGTCAAGAAGGCAGGGTCCAGGAAGAGACCTGCCCC 15521856 >seq61 Length=12943516 Score = 199 bits (220), Expect = 1e-47 Identities = 362/518 (70%), Gaps = 34/518 (7%) Strand=Plus/Minus Query 1306 GGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACATTGCG 1365 || || || |||||||| || |||||| || || ||| || ||||||||| | ||| Sbjct 4914012 GGAAAACGAAACACCATTTGTG-GTTTGGCCCTGCGACCTTGGGAAAGACCAACTTGGCG 4913954 Query 1366 GAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTT 1425 | || ||||| | || |||||||| ||||| |||| ||||| ||| ||||| Sbjct 4913953 -AGGCTGCTGCCCATGATGTTCCCTTCTATGGCTGGGTCAGGTGGACAGCTGAAGACTTT 4913895 Query 1426 CCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCC 1485 |||||||| |||||| || ||| || | | ||||||||||||||||| |||| ||||| Sbjct 4913894 CCCTTCAAAGATTGCCTCCACAGGAGGATCATCTGGTGGGAGGAGGGAAAGACGACGGTG 4913835 Query 1486 AAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAG 1545 || | ||| ||||||||||||||||| || ||||| |||| | |||||| || || Sbjct 4913834 AAAATGACGGAATCCGCCAAGGCCATTCT-GGGGGCAGTGAGGTCCTCGTGGATCAGAAA 4913776 Query 1546 TGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATG 1605 |||| | ||| |||| || | || |||| |||| ||| ||||||||||||| Sbjct 4913775 CGCAAAACCTCC-CCCAAGCGGAAGCGACTGCCGTCTTCGTGACCAGCAACACCAACATG 4913717 Query 1606 TGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGACCGG 1665 || | ||| | ||| || |||||||||||| | || |||||| Sbjct 4913716 ----------TTCAGGGG--------GATCTT-GAACACCAGCAGCCGCTCCAAGACCGG 4913676 Query 1666 ATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGAAGCAG 1725 ||||| |||| || || | |||| | || || ||| || |||| |||| ||||| Sbjct 4913675 ATGTTTAAATCTG--CTTA-ACGCCATTGGGGGCCTGAC-TTAGCAAACTGACTAAGCAA 4913620 Query 1726 GAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTGGCGCATGAGTTC 1785 || ||| ||| | |||||| ||||| ||||||| |||| || ||| | |||| | Sbjct 4913619 GAGGTC--AGACT--TTCCGCGGGGCCTCTGATCACATGACTGACGTG--ACCTGAGGGC 4913566 Query 1786 TACGTCAGAAAGGGCGGAGCCAGCAAAAGACCCGCCCC 1823 | | || | ||||||| || || |||||||||| Sbjct 4913565 TTTGCCA-AGGAGGCGGAGTCAAGGAAGGACCCGCCCC 4913529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994506401710