Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq21 232 2e-57 seq61 201 3e-48 >seq21 Length=28505965 Score = 232 bits (256), Expect = 2e-57 Identities = 332/467 (71%), Gaps = 3/467 (1%) Strand=Plus/Plus Query 1256 AACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAAT 1315 || || || || ||||| ||||| ||| || | ||| ||||| ||||||||||||||| Sbjct 15521393 AAGATGGCTGAGGCCATTGCCCAGGCCATGACGGCCTATGGCTGTGTCAACTGGACCAAT 15521452 Query 1316 GAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAG 1375 ||||| |||||||||| ||| ||| ||| |||||| | ||||||||||| ||||| ||| Sbjct 15521453 GAGAAGTTTCCCTTCACTGACTGCCACGATAAGATGATTATCTGGTGGGAAGAGGGGAAG 15521512 Query 1376 ATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTG 1435 ||||| |||| ||||| |||||||||||||||||| |||||||||| | ||| Sbjct 15521513 ATGACACTCAAGAAGGTGGAATCCGCCAAGGCCATTCTCTAGAGCAGCAAGGTCCCTGTG 15521572 Query 1436 GACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAAC 1495 | || || |||| || ||| || |||| |||| || || || ||| | ||| |||| Sbjct 15521573 CATCAGAAAGGCAAATCCTCCACCAAGATTGACCAGACTCCTGTTATCCTAACCCACAAC 15521632 Query 1496 ACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTC 1555 | |||||||| || || |||| || || ||||| ||| |||||| ||| | | Sbjct 15521633 AAGGACATGTGCCCCTTGGTTGAGGGAAATCACACCATCTTGGAGCACTGGCAAGACCCC 15521692 Query 1556 CAGGACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTG 1615 || ||| ||||||| || || || || || | | |||||| ||| |||| | Sbjct 15521693 CAAGACAGGATGTTCAAATTTGAGCTGACTCATCCTCTGGAAACGGAC---AGCAAAATC 15521749 Query 1616 ACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTGGCG 1675 || || ||||| || |||| || ||||| ||| |||||| | || ||| | Sbjct 15521750 ACCAAACAGGAGGTTGAAGACTTTTTCCGGAAGGCTTCTGATCATAGTTCGGAAGTGACT 15521809 Query 1676 CATGAGTTTTACGTCAGAAAGGGCGGAGCCAGCAAAAGACCCGCCCC 1722 | || || | |||| |||| || |||| || ||||| ||||| Sbjct 15521810 GAGGAATTCTTGGTCAAGAAGGCAGGGTCCAGGAAGAGACCTGCCCC 15521856 >seq61 Length=12943516 Score = 201 bits (222), Expect = 3e-48 Identities = 331/468 (71%), Gaps = 31/468 (7%) Strand=Plus/Minus Query 1205 GGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCG 1264 || ||||| |||||||| || |||||| || || ||| || ||||||||| | ||| Sbjct 4914012 GGAAAACGAAACACCATTTGTG-GTTTGGCCCTGCGACCTTGGGAAAGACCAACTTGGCG 4913954 Query 1265 GAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTT 1324 | || ||||| | || |||||||| ||||| |||| ||||| ||| ||||| Sbjct 4913953 -AGGCTGCTGCCCATGATGTTCCCTTCTATGGCTGGGTCAGGTGGACAGCTGAAGACTTT 4913895 Query 1325 CCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCC 1384 |||||||| |||||| || ||| || | | ||||||||||||||||| |||| ||||| Sbjct 4913894 CCCTTCAAAGATTGCCTCCACAGGAGGATCATCTGGTGGGAGGAGGGAAAGACGACGGTG 4913835 Query 1385 AAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAG 1444 || | ||| ||||||||||||||||| || ||||| |||| | |||||| || || Sbjct 4913834 AAAATGACGGAATCCGCCAAGGCCATTCT-GGGGGCAGTGAGGTCCTCGTGGATCAGAAA 4913776 Query 1445 TGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATG 1504 |||| | ||| |||| || | || |||| |||| ||| ||||||||||||| Sbjct 4913775 CGCAAAACCTCC-CCCAAGCGGAAGCGACTGCCGTCTTCGTGACCAGCAACACCAACATG 4913717 Query 1505 TGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGACCGG 1564 || | ||| | ||| || ||||||||||| ||||| |||||| Sbjct 4913716 ----------TTCAGGGG--------GATCTT-GAACACCAGCAGCCGCTCCAAGACCGG 4913676 Query 1565 ATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAAAGCAG 1624 |||||||| | | || | |||| | || || ||| || |||| |||| ||||| Sbjct 4913675 ATGTTTAAATCTG--CTTA-ACGCCATTGGGGGCCTGAC-TTAGCAAACTGACTAAGCAA 4913620 Query 1625 GAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTG 1672 || ||| ||| | |||||| ||||| ||||||| |||| || ||| Sbjct 4913619 GAGGTC--AGACT--TTCCGCGGGGCCTCTGATCACATGACTGACGTG 4913576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13944954950630