Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq21 132 1e-27 seq61 102 2e-18 seq24 84.2 6e-13 >seq21 Length=28505965 Score = 132 bits (146), Expect = 1e-27 Identities = 235/341 (69%), Gaps = 7/341 (2%) Strand=Plus/Plus Query 1237 CTACGGCTGCGTCAACTGGACCAACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGAT 1296 ||| ||||| |||||||||||||| ||||| || ||||||| |||||| || ||||| Sbjct 15521428 CTATGGCTGTGTCAACTGGACCAATGAGAAGTTTCCCTTCACTGACTGCCACGATAAGAT 15521487 Query 1297 GATCATCTGGTGGGAGGAGGGCAAGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCAT 1356 ||| ||||||||||| ||||| |||||||| |||| || || |||||||||||| Sbjct 15521488 GATTATCTGGTGGGAAGAGGGGAAGATGACACTCAAGAAGGTGGAATCCGCCAAGGCCAT 15521547 Query 1357 CCTCGGCGGCAGCAAGGTGCGCGTCGACCAGAAGTGCAAGAACTCGCAGC-AGATCGAGC 1415 ||| |||||||||| | || | ||||| |||| ||| || | |||| || | Sbjct 15521548 TCTCTAGAGCAGCAAGGTCCCTGTGCATCAGAAAGGCAAATCCTC-CACCAAGATTGACC 15521606 Query 1416 CCACGCCCGTCATNNNNNNNNNNNNNNNNNACATGTGCGAGGTCGTCGACGGGAACTC-G 1474 || || || || |||||||| | || || ||||| || Sbjct 15521607 AGACTCCTGTTATCCTAACCCACAACAAGGACATGTGCCCCTTGGTTGA-GGGAAATCAC 15521665 Query 1475 ACCACGTTCGAGCACCGGCAGCCGCTCGAGGACAGGATGTTCAAGTTCGAGCTCACCGTC 1534 |||| || |||||| |||| | | | |||||||||||||| || ||||| || || Sbjct 15521666 ACCATCTTGGAGCACTGGCAAGACCCCCAAGACAGGATGTTCAAATTTGAGCTGAC--TC 15521723 Query 1535 AGGCTGCAGCCCACCTTCGGCAAGATCACCAAGCAGGAGGT 1575 | || | | || | |||| |||||||| |||||||| Sbjct 15521724 ATCCT-CTGGAAACGGACAGCAAAATCACCAAACAGGAGGT 15521763 >seq61 Length=12943516 Score = 102 bits (112), Expect = 2e-18 Identities = 127/173 (73%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 1229 GTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCCCTTCAACGACTGCGTG 1288 || |||||||| ||||| |||| ||||| || |||| |||||||| || ||| | Sbjct 4913936 GTTCCCTTCTATGGCTGGGTCAGGTGGACAGCTGAAGACTTTCCCTTCAAAGATTGCCTC 4913877 Query 1289 GACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGACGTCCAAGGTCGTCGAGAGCGCC 1348 ||| || ||||||||||||||||||||| |||| |||| || | || |||| Sbjct 4913876 CACAGGAGGATCATCTGGTGGGAGGAGGGAAAGACGACGGTGAAAATGACGGAATCCGCC 4913817 Query 1349 AAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTCGACCAGAAGTGCAAGAACTC 1401 |||||||| || || ||||| |||| | ||| || ||||| |||| | ||| Sbjct 4913816 AAGGCCATTCT-GGGGGCAGTGAGGTCCTCGTGGATCAGAAACGCAAAACCTC 4913765 >seq24 Length=27450550 Score = 84.2 bits (92), Expect = 6e-13 Identities = 278/422 (66%), Gaps = 24/422 (6%) Strand=Plus/Minus Query 2625 ATCTGCTGAGGTGGCTGCGGGTGGTGGCGGACCAGTGG---GCGACGATGCACAAGGTGC 2681 |||| ||| ||| ||| ||| | || || |||||| | ||| | || ||||| Sbjct 7342069 ATCTACTGCAGTGTCTGTGGGGAGAGGGGGCACAGTGGTAGGTGACAGTAACCAGGGTGC 7342010 Query 2682 CGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGACGGCGC 2741 | || | || |||||||||| ||||||||| | ||||| |||||| | | Sbjct 7342009 CTATAAGGAGGCTAATGCCTCACAAAATTGGCACTGAGATTCTCAATGGATGA--GAAAC 7341952 Query 2742 TGTCATCACCAAGTCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCG 2801 | | | |||| || ||| ||| | || ||||||| ||||||||||||||| | | Sbjct 7341951 AGACTTTACCATGTTCACATGAATCCGGGTCCTGCCC--CTACAACAACCACCTTTTTTG 7341894 Query 2802 CCAGA--TCCAGTC---CAGCGGCA-CCGGAGACGGCA---CGTACTTTGGTTACAGCAC 2852 |||| || |||| || |||| ||| | | || | |||||||| | |||||| Sbjct 7341893 ACAGATTTCTAGTCTTAGAGGGGCAGAAGGAAATGTCAGTGCCTACTTTGGATGCAGCAC 7341834 Query 2853 GCCTTGGGGATACTTCGATTTCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCA 2912 || ||| |||| || || || || | ||||| | || | ||||| |||| ||| Sbjct 7341833 TCCCTGGAGATAGTTTGACTTTAACCAGTTCCATAG--ACAGAGCACCCAGAGACTAGCA 7341776 Query 2913 GCGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAA 2972 |||| |||| | |||||| | || | ||||| |||| || || | || || Sbjct 7341775 AACACTCACCAACTATCACTGGAGATTCTGTCCCAA-AGGCTTCAAAGGAAAATGTTTAA 7341717 Query 2973 CATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGA--CCATCGCCAACAACCTC 3030 ||||| ||||| ||| ||| | | ||| ||| ||| | ||| |||| |||||| Sbjct 7341716 TATCCACGTCAACGAGATCATAATGCAGGACAGCATCACAATGCCA---CCAATAACCTC 7341660 Query 3031 AC 3032 || Sbjct 7341659 AC 7341658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13602570788235