Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq2096 86.0 2e-13 >seq2096 Length=284554 Score = 86.0 bits (94), Expect = 2e-13 Identities = 155/224 (69%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 1325 TGCAACTACCGGGAAGACCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGG 1384 ||| || ||| | ||| ||||||| || |||| || ||| | ||| |||||||| | Sbjct 256230 TGCCACCACCAGCAAGGCCAACATTGCCAAGGCTATTGCCTATGCTGA-CCCTTCTATGA 256288 Query 1385 GTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGAT 1444 || || ||||||| ||| |||||||||||| | ||| || ||||||||| || Sbjct 256289 CCATGTCAAGTGGACCAGCGAGGACTTTCCCTTCACCATCTGAGTGGACAAGATGACTAT 256348 Query 1445 CTGGTGGGAGGAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGG 1504 |||| ||| || | ||||| | ||||||| || |||| |||| ||| || || Sbjct 256349 CTGGCAGGAAGAAGAAAAGATTGCATCCAAGGTGGTAGAGTACTCCAAGACCA-TCGTGG 256407 Query 1505 AGGAAG-----CAAGGTGCGCGTGGACCAGAAATGCAAGTCCTC 1543 |||| | ||| || | | |||| ||||| | || ||||| Sbjct 256408 AGGAGGGGGTCCAATGTCCACATGGATCAGAAGTATAAATCCTC 256451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14849618385780