Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq42 78.8 3e-11 >seq42 Length=1118793 Score = 78.8 bits (86), Expect = 3e-11 Identities = 87/115 (76%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 3037 CTTCCACAGCCACTGGAGCCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTT 3096 ||| ||| || | |||||||| ||||| | | | ||||||| ||||||||||| | Sbjct 112394 CTTTCACTGCTCCGGGAGCCCCAGAGACCAGTAGTGGCTCATCAGTAACTACTGGGGATC 112335 Query 3097 CAGACCCCGGTCCCTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACG 3151 |||||||| |||| |||| | ||||||||| | |||||||| |||||| || Sbjct 112334 CAGACCCCATAATCTCAAAGTC-AGATCTTCAACGTCCAAGTCAAGGAGGTCTCG 112281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14705281078510