Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq29 100 8e-18 >seq29 Length=26584176 Score = 100 bits (110), Expect = 8e-18 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 2996 TTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTGGAGC 3055 || || ||| |||||||| || ||||||| |||| ||| ||| || | ||||| Sbjct 1280887 TTAGGGTACCACACCCCCTAGGCCAGTGTTGACTTCAACCACTTTCACTGCTCCGGGAGC 1280946 Query 3056 CCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCCTCAGA 3115 ||| ||||| | | | ||||||| ||||||||||| | |||||||| |||| | Sbjct 1280947 CCCAGAGACCAGTAGTGGCTCATCAGTAACTACTGGGGATCCAGACCCCAAAATCTCAAA 1281006 Query 3116 GTCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGGTGCAGGAC 3160 ||| | ||||||||||| |||||||| |||||| ||| || ||| Sbjct 1281007 GTC-AGATCTTCAACATCCAAGTCAAGGAGGTCTCGGCCCAAGAC 1281050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14741378512925